RNA id: TU2376559


Basic Information

Item Value
RNA id TU2376559
length 353
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G2078571
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 36452814 ~ 36453166 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGTAGGCTGTCtggttgttgttggtaatcaagcctaatactgttgtgtcgtctgcaaacttgatgattgagttggaggcctgcatggccatgcagggagtacatgagggggctgagcaagagggggctgagaacgcacccttgtggggccccagtgttgagggtcagtgaagtggagatgttgtttcctacctttaccacctgggggcggcccgtcagaaagtccaggacccaattgcacagggcggggttgagacccagggcctccagcttgatgatgagcttggagggtactatggtgttgaatgctgcgctatagtcaattaacagcattcttacatacattcttaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2376550 lncRNA upstream 14893 36436186 ~ 36437921 (+) True G2078562
TU2376531 lncRNA upstream 41434 36408004 ~ 36411380 (+) True G2078548
TU2376527 lncRNA upstream 60738 36391390 ~ 36392076 (+) True G2078544
TU2376504 lncRNA upstream 98874 36352720 ~ 36353940 (+) True G2078530
TU2376502 lncRNA upstream 101168 36351323 ~ 36351646 (+) True G2078529
TU2376560 lncRNA downstream 143 36453309 ~ 36453542 (+) True G2078572
TU2376609 lncRNA downstream 79503 36532669 ~ 36536033 (+) False G2078616
TU2376612 lncRNA downstream 79503 36532669 ~ 36534675 (+) False G2078616
TU2376619 lncRNA downstream 79503 36532669 ~ 36536033 (+) True G2078616
TU2376620 lncRNA downstream 86164 36539330 ~ 36539929 (+) False G2078617
XM_021588445.2 mRNA upstream 12105 36438225 ~ 36440709 (+) False LOC110508005
XM_036965269.1 mRNA upstream 71803 36365655 ~ 36381011 (+) False naalad2
XM_036965270.1 mRNA upstream 71803 36365655 ~ 36381011 (+) False naalad2
XM_036965271.1 mRNA upstream 71803 36365655 ~ 36381011 (+) True naalad2
XM_036965203.1 mRNA upstream 440480 36006033 ~ 36012334 (+) False LOC110507977
XM_036965056.1 mRNA downstream 595 36453761 ~ 36546497 (+) False LOC110507218
XM_036965035.1 mRNA downstream 157569 36610735 ~ 36618726 (+) True LOC118944683
XM_036965308.1 mRNA downstream 225607 36678773 ~ 36703523 (+) True LOC118936607
XM_036965237.1 mRNA downstream 254760 36707926 ~ 36850018 (+) False LOC110507948
XM_036965234.1 mRNA downstream 254760 36707926 ~ 36863967 (+) False LOC110507948
TU2376553 other upstream 13460 36438375 ~ 36439354 (+) True LOC110508005
TU2376423 other upstream 150772 36300938 ~ 36302042 (+) False G2078493
TU2376424 other upstream 150772 36300938 ~ 36302042 (+) False G2078493
TU2376426 other upstream 150772 36300938 ~ 36302042 (+) False G2078493
TU2376427 other upstream 150772 36300938 ~ 36302042 (+) True G2078493
TU2377138 other downstream 820320 37273486 ~ 37276857 (+) True LOC110536894
TU2377335 other downstream 825939 37279105 ~ 37280832 (+) True G2079197
TU2377712 other downstream 913573 37366739 ~ 37368136 (+) True G2079468
TU2377942 other downstream 1362712 37815878 ~ 37819286 (+) False G2079657
TU2377944 other downstream 1362712 37815878 ~ 37819286 (+) True G2079657

Expression Profile