RNA id: XM_039778960.1


Basic Information

Item Value
RNA id XM_039778960.1
length 2831
RNA type mRNA
GC content 0.47
exon number 9
gene id trim23
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 28327180 ~ 28338314 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGAGGACGAGAGCCACACGGCCTCCATGTACTGCACCGTGTGTGCCACCCACCTGTGTGCCGAGTGCTCCCAGCTCACCCACTCCACCCGCACGCTGGCCAAACACCTTTGTCTGCCTGGAGGAGGCCTGTCAGTCTGGGCCGctcatgtgctgtgtgtgtaagGAGTACGGCAAGCACCAGGGACATAAGCACGCTGTTCTTGAGACTGAAGCTAACCAGATCCGTGCATCCATTCTGGACATGGCCCACTGCATCCGCACCTTCACAGATGAAGTGTCCGAGTACTCAAGGAAGCTGGTGGGCATCGTGCAGCAAATAGAAGGTGGAGAGCAGATAGTCGAGGACGGAGTAGGCATGGCACACACTGAACACGTCCCCGGCACAGCAGAGAGCGCACGCTCCTGTGTCCGAGCTTACTTCGCCGACCTTCACGAGACTCTGTGTCggcaggaggagatggcccTGAGCGTGGTGGACGCTCACGTCAGGGAGAGGCTGATCTGGCTgaggcagcagcaggaggacaTGACCATCCTGCTGTCCCAGGTCTCCACCGCCTGCCTGCACTGTGAGAAAACTCTTCAGCAGGATGACTGCAGAGTTGTGCTGGCGAAGCAGGAGATCAACTGTTTGCTGGAGACGCTTCAGAAGCAGCAGCACCAGTTCACAGAGCTGGCAGATCACATTCAGCTGGATGCTGGCATCCCCGTCACCTTCACCAAGGACAACCGGGTCCACATCGGTCCAAAGATGGAGATCCGTGTAGTAACTCTGGGGCTGGATGGAGCTGGAAAAACCACCATCCTCTTCAAGCTGAAACAAGATGAGTTCATGCAACCCATCCCAACCATCGgTTTCAATGTGGAGACGGTCGAATATAAGAACTTAAAATTCACCATCTGGGACGTGGGTGGAAAACATAAGCTCCGACCCCTCTGGAAACACTATTACCTGAACACTCAAGCGGTGGTGTTTGTGATTGACAGCTGCCACAGGGACAGACTGATGGAGGCGCACAGTGAGCTGGCCAAACTACTGACGGAGAAGGAGCTGAGAGACGCCTTGTTGCTCATCTTTGCAAACAAACagGACGTCCCCGGCGTCGTGTCTGTGGAGGAGATGACGGAGCTGCTGAGCCTACACAAGCTGTGCTGCGGGAGGAGCTGGCACATTCAGGGCTGCGACGCCCGCAGCGGGATGGGCCTCCACGAGGGGCTGGATTGGCTCTCCAGACAGCTGGTGGCCGCTGGTGTCCTGGATGTTgcctaaatgtaaaaaaaaaaaaaaaacctctgtgttttgcccctcccccaccccaccAGCCTTTTGAGCCCTGCTCATCGGTTCTTCCCACCACTTCCCAGACTGCGCGCTTTACGCCTGCCCTCCTCATCTTTCCTCCTTTGTTCACCAGCGTgggcaaagaaaaacaaactttcTCTAGCTTCACTGAATCGATACACGGAAACTACAAAACCACCCACCCTCCGAGAAATAAACCCAGTGGCCCCAAAACCTGAGTTCAGACTACAAACTCCCATCCTGGTTCATTTCTAAGGCAGCGTACACGTAACATAACACATTGCTTACTTtagtttttcttcctttctaaCCCTTTTTTTCCCAGAGACAAGCCATTAATCTGGCATCTAAAGCTACCTGACTTATGTCcagtaaaatgttaaaaatcctTGTGTCCTGACTTGAGTGAactcttatgttttttttctatctcaCTTTCATCATAACCACCTTCATATGTGACCGTAACCTCAACTAAACTGCAGAGTAGTCTGTATTCGTGATAGTATCATTCACGTACCTTCTGTTGATTCAGCATATTTGGACAACACATCTTATAATCGTGAGAAATAACTACAATGCCCTTTTTTTTAGCAACATTCAGTAAATACGCAGGTGAGACAGGACCGAAATGTTCACTACGGTTTAAATGAACCCAGACGACTTCCAGTGGCTTTAGACGGACGGTCAAATGTTCCGATTTTGGCTAAATTCTCACTTTGCCTTGACATCTATTGTAAGCAATAGCAGTTGATAGTTTCATAGGGTCTTTAAGTTATTGTGggctttattattttttaagagTACTGTATGAGCCTATTTAATGCCACAGCTGGTCTCGAAATGGCGCACCAGTCGAGTTTTGGTTTGGATGTTTTTTCTGTTACAGAACTGTTGTACTGAACTTATTTATGAGCGGGAACACGGATGTTACTTTGATACGAGGCTTTTGTgagaaactcagttttttttaagcacCGATTCTGCCTCTGTTTTGTGGAGTCTTGCACGCAGACTGTGTTATAATACACTCATTTTCTGTCTCACTACCGGTTTTCATTTGGGAGCAAATGAACTATCTGCTGTTTCTTAGAAGAGTATTAACCTCactgcaaaaataaaataaaaatatatatatattcctatTTAAACATCTCCGAAGTCCTGTTAATCTGTTGCAAGTGCTTGAGATGGTACACCTTAAATCAACAGCCTTCAgtaataatgtaatgtgaaaCATTAAGCCTAACACTGACACTTGTCTTGTTATTAAGAACCCATCCTTTGACTTAGATTGAATTCATTGCTATGTAATGTTTAATACATGTATCTATGTATAAAAAtactaatacaaaaaaaaaatgcacgtGTGATAAGCCTTTCCACATTTGTGAAAACATGTCATTTGTTTTTGAAACTTAGAAAGCACAATGCGCATCGAAACCTTTGTTACCAGTGGACTTGATAATGGCTTTTGTAAATTATTCATAATGTGTTGCtgtaaaataaacattaaattgaCCTTA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241421 lncRNA upstream 118174 28211159 ~ 28211592 (+) True G178348
TU241316 lncRNA upstream 390018 27938904 ~ 27939748 (+) True G178267
TU241315 lncRNA upstream 396747 27932818 ~ 27933019 (+) True G178266
TU241305 lncRNA upstream 515888 27813483 ~ 27813878 (+) True G178256
TU241251 lncRNA upstream 623703 27702859 ~ 27706063 (+) True G178210
XR_005636721.1 lncRNA downstream 183970 28522284 ~ 28524840 (+) True LOC120545668
TU241519 lncRNA downstream 183979 28522293 ~ 28524832 (+) False LOC120545668
TU241530 lncRNA downstream 214513 28552827 ~ 28553090 (+) False G178426
TU241531 lncRNA downstream 214513 28552827 ~ 28554101 (+) True G178426
TU241524 lncRNA downstream 228894 28567208 ~ 28569483 (+) False LOC120545218
XM_039780822.1 mRNA upstream 121809 28204951 ~ 28207957 (+) True LOC120546064
XM_039779616.1 mRNA upstream 140909 28157822 ~ 28188857 (+) True LOC120545370
XM_039778963.1 mRNA downstream 7834 28346148 ~ 28375167 (+) True cwc27
XM_039780513.1 mRNA downstream 123270 28461584 ~ 28464013 (+) True LOC120545883
XM_039780179.1 mRNA downstream 152300 28490614 ~ 28493036 (+) True LOC120545644
XM_039780475.1 mRNA downstream 165963 28504277 ~ 28519059 (+) False lin54
XM_039780476.1 mRNA downstream 167294 28505608 ~ 28519059 (+) False lin54
XR_005636773.1 other upstream 631834 27656536 ~ 27697932 (+) False lhfpl2a
TU241015 other upstream 1318371 27010197 ~ 27011395 (+) False nln
XR_005636774.1 other upstream 1714807 26586647 ~ 26614959 (+) False LOC120546038
XR_005636601.1 other downstream 241954 28580268 ~ 28588026 (+) False LOC120544907
TU241633 other downstream 606193 28944507 ~ 28945444 (+) True G178506
TU241682 other downstream 746635 29084949 ~ 29092326 (+) True G178529
TU242100 other downstream 1404309 29742623 ~ 29744075 (+) True G178845
TU242091 other downstream 1455830 29794144 ~ 29795314 (+) False LOC120545429

Expression Profile