RNA id: XM_039780558.1


Basic Information

Item Value
RNA id XM_039780558.1
length 5338
RNA type mRNA
GC content 0.42
exon number 12
gene id srek1
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 27076510 ~ 27091059 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cAATGCCCCTCTGTCTTTCTCGTCCAAAGTGTGCTATATAAAGTACCGAGACCCCTCCAGTGTTGGTGTGGCCCAACATCTCACCAATACAGTTTTTATTGACAGAGCTTTGATAGTAGTGCCATGTGCGGAAGATGACTAGACTGGCCCAGCTGTTACACTACACTAGCCTGAGTCAGGCATTGTTTTCCAAGCCACTATCCCCGATCGGGCCAACGCAGCCTTCAAGGGGGGGATGTGACCAGGAGAATAGCCTGCTGAACCTTCCAAGATGGACACCttgtctctttttatttatttattttttcttttggtttGTTTCCTTTCATACTTTCCCATGTTGTCTACTGTCTCTATCTAGAAACTACAGTATTGCTTATCTCTAGctttgtgtttatatttgttattttggtttgttgttttgattattgtccaaccccccacccccctctctctctctgctacaGCTGCAGCTTGTGTGTGATTGAATTCTGTCCAGGTTGCTACGGCATACCGGTGGGATGTGTATCACACATGGGATGCTAAGAGGATCACTAACACTTAACTCTCTTGTCACCTACTCCTGTTGTCATAGTGAGGGGCTAGACATTATAAAATGATGCAGCCATTGGGGTTATCTTGTGTTGCACACCTTTCCAACACTGCGAAAACGATCGCCCCACGGAAAAGCGCCCATGCTTGATATCGTATGGTTCATGACCAATATGTTTCCAGTACAGGGAAAATCCCAGAAGAGGCCAAAGCTTTGTCACTTTTGGCACCTGCCACCCCAGTACCCAGTCTGATTTCCGGAGGGGGGCTGCTACCAATTCCTACTCCAGCGCCGCTTCAGAATCTGAACCTTCCCGTAGTGAATCGGCTGTCGGCTGCTCTGGACCCCACAGCATCATTGCTCTCCCAGCCCCCCCTCATGGGAAATGTGGATCCCTCAAAAGTCGATGAGATCAGGAGGACCGTTTATGTTGGCAACTTGAACTCACAGACCACCACTGCAGACCAGCTGTTGGAGTTCTTCAAGCAGGTGGGAGATGTGAAGTTTGTGCGAATGGCTGGAGATGAGACTCAGCCGACGCGCTTCGCCTTCGTAGAGTTTGTCGAGCAGGATTCCGTCGTCAGAGCCCTGACCTTCAACGGAATCATGTTCGGAGACCGACCCCTGAAGGTTAATCATTCCAATAACGCCATAGTAAAACCCCCAGAGATGACGCCGCAGGCTGCTGCTAAGGAGCTAGAAAGTGTGATGAAGAGGGTGAGAGAGGCCCAGAATACCATTGCTGCTGCCATAGAACCAGCGGACATAAAGAAGCTTTCTTCCAGTCGGTCTATAAGGTCACGCCGGTCACGCTCGCGGTCACGCTCCCGCTCACCCTCGAGAACGCACAGGAAAAGGTCCCGTTCGAAACACAGACCAGCGCCAAAGTTGTGTCCGAGGACTGACTCCCACAATTCCCGAAGCAGCCACAAGAGGCGTTCTCGCTCCAGAGACAAGAGACGCAGTCGCAGTCGCTCTAGGGCTCACAGGAGGAAGAGTAGGGATCGGTCCTGGAGCCCTCGGAGGAAAGTCAGATCACCCTCCCCAAAAAGAGGTAAGAAAGACAAGAGGAGGGAGCGCAGCAGGGACAGAAAGGGCCGCTCTACATCCAGGAAGAGGAGCCGCAAGGACGAGGACCGGCTAAAGAGCAGGGCCAAGCCAACGAAGGTGCAAAGGCACTATGACCGAGAAGAAAAGGAAGACTATGTAAGTGACAGAGAAGACTCCGTCACACTCAGCGAGGACATGATGTCCTCACCCTGCACCCAGCATAACGGCAGCTACAAGACTCACAATGAGTATGCATCAATGGGTGCAGACCGCACCAAGTGACTTTTACATCactatgaagaaaaaaaactaatcccGCTGCATCAAATGATCTCCGTGCCCATCACGTGCGTATACACTCATCAACACCAGAACACCATTCACAACAGTGCGTTTTTTTTCACCATCACCTGATTTCTACAGCACATTCTTGGCAAGACATGGATCCTGTTATTCAGCGAATTTTCAGTATCCCACTCAAAGGGCAAGTGAGCACTCGGTACACCAGAGATAGCCCCACCTTTCCTGCTACCAAGGAAGCCGAAGATTTTGGGACTTGCAGAAGGTGCACGatgtaatgtaaaataacagaaacaacACTAAATGCTACAGGCTCAGAAAAGACCATCAAGTTGACACAAGGCTGTCATattgtcatatcacaatatgaTATTGTGTCCACCTCCTGTATGTGTTAATTACATAAATAACTCAATACTTGTTCTATTCTTTCTGTACAGACCTTTTCAACAGCCTGGCCCCTTGTTATCTTCCTGTCAGTTGATTTATTCGCATAGACTGCAACCCGAAAATCAACTTGGGGCCATTTAGAATGTTTGTTTTCAACTTTGGAATGGTCTATAGATGCTAAAACGGTCACCTCCCCCAGCAGACAAAGACAAATGTGCATGCCTGAAGCAGCTGCAGAGCTTTTTAAGTAACTCCTCGTAGTCCGTCACATGAAAGAGCGGCCTCAGAGGAGACCGCTTCAGGCAGAGATCCCACAAGAAGAGCAGAGTTAATACTCGTTAAAAAATTTGAAGCCAGATTTCAATTATGGATTGGTCCCTTGTTACATGGATATTTCCTGATGAAAATGAGCACATTTTGCTCTCCATTCCTCCTGTGACATCTTGACCACCCACCTAAATACGCTTTTGATGCATCTAAGATTATCAGTATTTGTCATACTGTAGTATGTATGCCATTTCCTTAAAGAAAATGCAGCAACAATCTGCATTAACAGTAATACAGTGAATCTTACATTATGCTTATTATCTCATTTATTAGATGAGATTGGAACTGCTTGAGATTGGAAAAATTTTCAATCGTAGagagtttttttaaataggttTCCTTTATGGCTGGTGTGTGAGAATAAGTTGAAAAGTGGGGCTCTCAAATGAATTGGTAACAGTAACCCACACTATGGTCGCATCGCCAGACCGATCTCCACAGCGCGAGGTCTGTGTGTGAGGTCTGGCTACCAtgcttatctattctgggataggggatAAAAACattctggcttgtttgtattttaaaacaattaCAACAGCGTGCAGCAACAGTGCCCTTGCGAAATCAATCCCTGAGGGGAGGGACGAGCTGGATGACGCGCTTTATCCCAGCGCTATACCTCCGGTGAGTCAGACTAGTAACACACAGGAAAAAGGAGGTTAGCTGCAGAAAAGTGAGGCAATTTAACCTGCTCTATATGTGCAGTGTGCACAAATGGAGGCACTCAAAGGCAAAACGAAGGCTGTCAGATGATGTAGATtgcaacacatttttaaactttGCACACTTCTTCTTCAGACAGCCTTTAATACAGAATATTACAGTTTTAACACAATTACTGCATTAAATCCGTATTATTCTATTCTATCACTGTCGCGAAGCCCCCAGTTGAATCACCAGTTTCTCATGTGACTTTTCATTTATCGTATAGCCACTTTTTTTCAGACTTTGCAGGTTTGCATCAATTGCAtttgcaaaacaaacaaaaataggATTATAGTATAATCCAGGCCATTGTCATGTTAGGTTCTGTATTTAGATTTGCTGATCACTAACGCAACAAAAAACAGTACCAATCAAAACAAGGTTCGCACCAACTAAACCAGATACTTTTATTGGGCCAcctgaaatgtttaaaaaaaaaaaatagaccatTATATTCATGTCATTATTGACACCTTGTGAGGTAATGGATAAGCTTGCCTCTCTCTGACTGCGGTCTCATGGGGGTGTAACTGTTTTTCCTCTTTATTCTGCTGCTCTGGCATTGGTGTGGCCGTGACAGCAACTTCCCATAATCTGTTGGCTTGTTTACTGAGTGAGACAAATATTGAATACATGTTTCTTCTAGGTGTAAGAACATGAGGGCTAGaataaaaacagtttttataaaaaataaataaaaaaagctcaTTTGCCCTTTGTGTGGTGTTAAAGGGAGATTTAACCAGGTCATTGATGAGTCCTTTGTTCCCCGTTCGGCACCATTTTTTTCTCCGTTATGGGAACTGGGACGACCTGCAAAATGTACGCTGTTGATTTTAAGACTTGAAGTGCTGTAATTATGTGAATGCACAGTGGTATTTTACGGTTTCTGTGTTGctaatgtattgtttttaaaagctgcattgCTCATTCGGTCAACATTAATacattgcttttgtttttttgtcgtaTGGGTGTAAATGTTCttgcatttttatatttctgattAGTCGCAACAATGTATCATGTTCCTTTTCCGGCTATTGTTGTAATGCTGTGAGATAAAAATTAACTGTTTTATAGATACAAAACAAGcctatactgtaaaaaaaaaaaaaaattatgctgGTGTGGAAAATGTCTGTTGGCTCATATTGCTCAAGACAGTAAGATGCAAACAATGTTCTGCCCACAGTGGCAGTCTACATAATGTCATATGTCAACTAACTGCTTGCAAGCAcagaaggttaaaaaaaagtgcctAGACTAAGATTGTACAGAGTATTCTAATAAAATATGGAGACTTATTGACAGATGCAACCCAAATTTATTGTTTAGGATGTTAAATAGCTAAAACTAATGAAATATTCTATTTAAGTATTGTCAGCTGCCTTTAGGAATTAATAGAGTGGGTTAAACATTCATGGGACTTTTGTCgtttattattagtagtatatcatttgtttttctgtcatttttagtgTTGCAGTTTCAGTTTGCTGTATTGTGATTGTGTCAAAAATGTGTCTGCAAACTAGCCCCAGTTCGagatcagtgttttttttttaagtttctagGAAAGCTTGTTATATGTTACTATTAAGGAGAGTAAATTTAAGGAGACTTAAATTCCACTTCTATGGCTTTTACAAACCTAATTTaaaagtatttcttttttttcttttttatttacacaatgCTTCAGTTTGAAGTGGTGAACTCGTGATAAAGTTTAGTACAAAAGCATTTCCAACACAACTGACAGTATATaaagaattttattttttatatccaTGTATCCATTATGTACGGTAAATACTGTAGAAACGATTCATAGTTTgctcctggggggggggggttaggcACTCAATATCTGTGTTAGGGACTGGATGTAAAGGTTTGGTAACACTGTTTTTGAAGAGCTtgggtgtatgtatgtacgttGTCCTTAGTTTGAAGATACATCTGATCTGTTTCCATAAACCACTCAATAAAGacacttttcattta

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241014 lncRNA upstream 11227 27065277 ~ 27065705 (+) False erbin
TU240899 lncRNA upstream 330672 26727838 ~ 26746260 (+) False LOC120545040
XR_005636783.1 lncRNA upstream 384044 26691381 ~ 26692888 (+) True LOC120546076
TU240870 lncRNA upstream 561970 26514526 ~ 26514962 (+) True G177937
TU240792 lncRNA upstream 703244 26369841 ~ 26373688 (+) True G177876
TU241021 lncRNA downstream 13719 27104778 ~ 27105030 (+) True G178045
TU241182 lncRNA downstream 380852 27471911 ~ 27513908 (+) True G178155
TU241195 lncRNA downstream 425764 27516823 ~ 27521956 (+) True G178166
TU241193 lncRNA downstream 426417 27517476 ~ 27524148 (+) False G178166
TU241237 lncRNA downstream 479494 27570553 ~ 27573678 (+) True G178198
XM_039779811.1 mRNA upstream 11226 27012889 ~ 27065706 (+) False erbin
XM_039779810.1 mRNA upstream 11226 27012891 ~ 27065706 (+) True erbin
XM_039779812.1 mRNA upstream 14104 27040607 ~ 27062828 (+) False erbin
XM_039780573.1 mRNA upstream 65483 27002459 ~ 27011449 (+) True nln
XM_039780714.1 mRNA upstream 84153 26981156 ~ 26992779 (+) False trappc13
XM_039780537.1 mRNA downstream 19694 27110753 ~ 27212141 (+) False mast4
XM_039780535.1 mRNA downstream 19694 27110753 ~ 27206164 (+) True mast4
XM_039780551.1 mRNA downstream 19694 27110753 ~ 27206164 (+) False mast4
XM_039780544.1 mRNA downstream 19694 27110753 ~ 27203046 (+) False mast4
XM_039780539.1 mRNA downstream 19694 27110753 ~ 27203046 (+) False mast4
TU241015 other upstream 65537 27010197 ~ 27011395 (+) False nln
XR_005636776.1 other upstream 461973 26586647 ~ 26614959 (+) True LOC120546038
XR_005636773.1 other downstream 565477 27656536 ~ 27697932 (+) False lhfpl2a
XR_005636601.1 other downstream 1489209 28580268 ~ 28588026 (+) False LOC120544907
TU241633 other downstream 1853448 28944507 ~ 28945444 (+) True G178506
TU241682 other downstream 1993890 29084949 ~ 29092326 (+) True G178529
TU242100 other downstream 2651564 29742623 ~ 29744075 (+) True G178845

Expression Profile