RNA id: TU91212


Basic Information

Item Value
RNA id TU91212
length 360
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G68289
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 40785552 ~ 40785951 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgagtgtttgtgcgtgcttgtgtgtgggggggggacagaattgtatgcactttgtgcacaacaaagtctgattgatttgtaatgctgaaatagtcattagatagttgcatctctccctgatctcatcagaaatggctctccttcttactcttcttccctcctcctcctcctcgttgttatcccctgtctctccctcctcctcctcttgctctctgtctattgttggcatccattgttccaaacaggtaatctgacctttggcctctgtataggcctatactaaagcaatgattggttagtgttcagttatgacataatgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91168 lncRNA upstream 40531 40744324 ~ 40745021 (+) True G68252
TU91166 lncRNA upstream 59739 40725320 ~ 40725813 (+) True G68251
TU91164 lncRNA upstream 63256 40721759 ~ 40722296 (+) True G68249
TU91142 lncRNA upstream 66906 40649105 ~ 40718646 (+) True G68233
TU91158 lncRNA upstream 78035 40707012 ~ 40707517 (+) True G68246
TU91203 lncRNA downstream 15167 40801118 ~ 40851228 (+) True G68280
TU91222 lncRNA downstream 82479 40868430 ~ 40868992 (+) True G68299
TU91200 lncRNA downstream 85580 40871531 ~ 40903085 (+) True G68277
TU91192 lncRNA downstream 100698 40886649 ~ 40917919 (+) True LOC120560183
XR_005639434.1 lncRNA downstream 101273 40887224 ~ 40887877 (+) False LOC120560183
XM_039802124.1 mRNA upstream 7507 40737947 ~ 40778045 (+) True tmc2b
XM_039802125.1 mRNA upstream 7507 40737947 ~ 40778045 (+) False tmc2b
XM_039804051.1 mRNA upstream 56731 40698916 ~ 40728821 (+) True tmc1
XM_039803456.1 mRNA upstream 92493 40684239 ~ 40693059 (+) True es1
XM_039803455.1 mRNA upstream 107277 40667325 ~ 40678275 (+) True tmem127
XM_039802425.1 mRNA downstream 34658 40820609 ~ 40834545 (+) False LOC120560177
XM_039802424.1 mRNA downstream 34660 40820611 ~ 40827805 (+) True LOC120560177
XM_039802426.1 mRNA downstream 63779 40849730 ~ 40869975 (+) True carnmt1
XM_039802427.1 mRNA downstream 92948 40878899 ~ 40883559 (+) True wu:fa19b12
XM_039802428.1 mRNA downstream 105778 40891729 ~ 40946809 (+) True trpm6
TU91093 other upstream 403102 40379417 ~ 40382450 (+) False tmem230b
TU91064 other upstream 550961 40233473 ~ 40234591 (+) True G68173
TU91053 other upstream 634875 40144759 ~ 40150677 (+) False vps33a
TU91051 other upstream 643070 40133792 ~ 40142482 (+) False vps33a
TU90883 other upstream 1371571 39410238 ~ 39413981 (+) False G68023
TU91208 other downstream 81296 40867247 ~ 40897108 (+) True G68285
TU91230 other downstream 158582 40944533 ~ 40949978 (+) False trpm6
TU91231 other downstream 163569 40949520 ~ 40949978 (+) False trpm6
TU91239 other downstream 239048 41024999 ~ 41038738 (+) True G68309
TU91293 other downstream 407307 41193258 ~ 41207379 (+) False anxa1a

Expression Profile