RNA id: XM_039802124.1


Basic Information

Item Value
RNA id XM_039802124.1
length 3398
RNA type mRNA
GC content 0.51
exon number 20
gene id tmc2b
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 40737947 ~ 40778045 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacctggcTTTCTGACACGGTGCCTTCACCGGGTGACTCATGGATGGAGAGAAGTCTGAAGCGAGCAGACAAGGACTAACTGCAGGAAATAACTAAAGGAGACGCAGCAAAATGCCTCCGAAGAGGAAAAGCAATATTTCAATTAACATTGAAGATGTTGGGATGGAGGTTGATGCGTCAGATAGCGGAAGTGAAGTGGAGGCCCGGAGGAAAGCTAAGAACAGACGAGCCAAACCCCAACGTAAAGCCAAACGGGTCAGCGACGATGATGAcgaagatgaagaagaggaggacgaggacCAGTCACCGAGGAAGAGAGGGCGGAAGAAGAAAGCGAAGCCCCGCGACAGCGAAGATGATGAAGACGAAGAGGAAGACAAccgaaatgtgaaaagaaaaagttCCAAAGCCTCCCGGAAGAAAGCGAAGGATGAGAGCGACGAGGAGAGCGAAGACGAacgagagaagaagaaaaagggagCCTCCAAAAAGGACAAAGAGGAGAGTAATAAGGAGAAGGGGAAAGGTAAAGGGAAACAAGGGAAGGATGTAGGAGCTGAGaaggacaagaagaagaagaagaataggAAGTTGAGCAGTTCTttcgaggaggaggaggaggaggaggagaaatcGGACGAAGAATCGCTGTCGGAGGGAGAGATGGCAGCCCTCAAGGAAGAGgtagaggagaagaagaaactgATCGCTACGTTAAGGAACAAACCCTGGCGCATGAAGAGGAGACTCACACTTCTCAAGGAGGCCCAGGATTTTGTTGAAAAATTTGAAGGAGCTCTTGGGAAAGGAAAAGGCCGGAAGCTGTTCGCATTCAAAGTCATGATGGCCAAGAAACTTATCAAGTTTAAACGTGACTTTGAGAACTTCAAAACGGCCTGTATACCCTGGGAGAGGAAGATAAAGGATGTAGAAAGTCACTTTGGATCATCCGTGGCTTCCTACTTCATTTTCCTGAGGTGGATGTACGGTCTGAACATGGTCCTGTTGGGGCTCATGTTTGGCCTGGTGGTAGTGCCTGAGGTTCTTATGGGTCTTCCCTATGGCTCCATTCCCAGAAAAACGGTGCCTCGAGAGGAGCAGGCCACAGCCATGGACTACTCTGTGCTCAGTGACTTTGAAGGATACTTCAAGTACTCCATTTTGTTCTACGGGTACTACAACAACGAACGACAGATCGGGCTTCTGAAGTTCAGGCTCCCGCTGTCATACCTGTTGGTGGGCGTTGGCATCTTCGGATACAGCCTGATGGTTGTCATACGAACGATGGCTCGTAACGCAAACGAAGGAGGGGACGGAGGGGATGAGGGAGACTTCACCTTCAGCTGGAAGATGTTTACCAGCTGGGACTACCTGATAGGAAACTCTGAGACCGCAGACAATAAGTACGCCTCCATCACCACCAGCTTCAAGGAATCCATCGTTGATGAACAGATGAACCAGAAAGATGAGAACATCCATCTCCGACGGTTCCTCAGGGTTCTGGCAAACGTTCTGATCCTCTTGTGCCTGGGAGGCAGCGGGTATCTCATCTACTATGTGGTGAAACGTTCGCAGGTCTTTGCTAATATGAATAAAGACGATCTCACGTGGATGGAAAAGAACGAGGTGGAGTTTGTGATGTCTTTGCTGGGTCTGGTGTGCCCTCCTCTGTTCGAAGCCATCGCAGAACTGGAAGATTATCACCCTCGTATTGCCCTCAAGTGGCAGCTGGGAAGAATCTTTGCCCTTTTCCTGGGAAACCTTTACACCTTCCTATTCGCTCTGTTTGACGAGGTCAATGCCAAGTTGGAGAGTGAGAAGGACATCAAAAATGCCACTATATTGGCTTTGCATGAGTACGCCGCCAACTACAGCTCCTTCTACAACACAACAGTTGTTCCTCCTCAAAATGTGCATCCAGCTGACGTCATCAGAGGACCCTGCTGGGAGACTGCAGTGGGAAAAGAATTTGTGAAGCTGACCGTGTCGGACATACAGGTGACCTATTTGACCATCCTGGTTGGTGACTTTTTGCGGGCTGTCATTGTCCGCTTCCTTAACTACTGTTGGTGCTGGGATCTGGAGGCAGGATTCCCTTCGTACGGAGAGTTTGACATCAGCGGGAATGTGCTGGGGCTGATCTTCAATCAAGGAATGATATGGATGGGGGCGTTTTACGCTCCGGGTCTGGTGGGTCTGAACATCCTGCGCCTCCTGAGCTCCATGTACTTCCAGTGCTGGGCCGTGATGTGCACCAACGTTCCCCACGAGAGAGTCTTCAAGGCCTCGGGGTCCAACAACTTCTACAtgggcctgctgctgctggtgctgtTCCTCAGCCTGCTGCCTGTGGTCTACACCATCATGACCCTGTCTCCGTCATTCGACTGTGGGCCTTTCAGCGGCCAGGAGAAGATGTATGACGTTGTCATGGAGACGATAGACCAGGATCTTCCCGCCTTCATCGGGAACATCTTTCTGTACGCCACCAACCCCGGACTCATCATGCCCGCTGTCCTCCTCATGGTGTTGGCGCTCTACTACCTGAATGCCGTTTCAAAAGGATACCAACAAGCAAACATTGACCTTAAGAAGAAGATGCAAATGGCTCGAGACGAGGAGAAGAACCGAAGGAACAACAAGGACAGCACCAACCAGGTGATGAAAGATCTGGAGGACTTGCTGCCAAACAAGTCTCTGATACCCCCTGCTGCTGAGGAGGAGCCACCCCCacctgATGTCGTGGTCGATAAGGGCAGCAGGTCTCCCAAAGTGAAGCCCGGTGCAGCAGGAAAAGGGGTTCATCTGCAGAGGGATGTGTCTCTGGCTGCCCCAAACCCCAGAGACCCAGTGACCCGGGACCTGGGCCCAAGAAGAGGGCCTCCTGGAAACGCCATGGGGCCCCAACCTGGGCCTgggaaaggaagaggaggaggacgagggggaggaagagggggaggaagagggagaggtggGCCTCCAAGGCCATAGGAGTCCTGATTCATGGactaaaaatccaaacgattcACCACAGACTCCAATTAATTGTTTGACTGAAGACCCCTTTCGCTGCTCTTCGTGGccttcatgttgaatgtaaacaagaagctgcttggccGCTTCTCTATCGTGATCATGTTAAACCtggccaatagcgcgccaggtggataagccaatttgtgattggttcccgaaGTCTAGATAGCTTACTGCATTGCAATCAGTGTAGGGTTCACTGGTTCTTGGTATGGTTTAACAGTTGCATTGATTTCATCTGAAGAATCCCTGTAAATAGTttgtaaaatgtctttttattttgtgtatgaCACCTATTAAAATAATTCCTCTCTGGCAAA

Function

GO: NA

KEGG:

id description
K21988 TMC; transmembrane channel-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91166 lncRNA upstream 12134 40725320 ~ 40725813 (+) True G68251
TU91164 lncRNA upstream 15651 40721759 ~ 40722296 (+) True G68249
TU91142 lncRNA upstream 19301 40649105 ~ 40718646 (+) True G68233
TU91158 lncRNA upstream 30430 40707012 ~ 40707517 (+) True G68246
TU91138 lncRNA upstream 92793 40644849 ~ 40645154 (+) True G68231
TU91212 lncRNA downstream 7507 40785552 ~ 40785951 (+) True G68289
TU91203 lncRNA downstream 23073 40801118 ~ 40851228 (+) True G68280
TU91222 lncRNA downstream 90385 40868430 ~ 40868992 (+) True G68299
TU91200 lncRNA downstream 93486 40871531 ~ 40903085 (+) True G68277
TU91192 lncRNA downstream 108604 40886649 ~ 40917919 (+) True LOC120560183
XM_039804051.1 mRNA upstream 9126 40698916 ~ 40728821 (+) True tmc1
XM_039803456.1 mRNA upstream 44888 40684239 ~ 40693059 (+) True es1
XM_039803455.1 mRNA upstream 59672 40667325 ~ 40678275 (+) True tmem127
XM_039804395.1 mRNA upstream 95778 40566070 ~ 40642169 (+) True snrnp200
XM_039804393.1 mRNA upstream 181881 40534048 ~ 40556066 (+) True zfand5a
XM_039802425.1 mRNA downstream 42564 40820609 ~ 40834545 (+) False LOC120560177
XM_039802424.1 mRNA downstream 42566 40820611 ~ 40827805 (+) True LOC120560177
XM_039802426.1 mRNA downstream 71685 40849730 ~ 40869975 (+) True carnmt1
XM_039802427.1 mRNA downstream 100854 40878899 ~ 40883559 (+) True wu:fa19b12
XM_039802428.1 mRNA downstream 113684 40891729 ~ 40946809 (+) True trpm6
TU91093 other upstream 355497 40379417 ~ 40382450 (+) False tmem230b
TU91064 other upstream 503356 40233473 ~ 40234591 (+) True G68173
TU91053 other upstream 587270 40144759 ~ 40150677 (+) False vps33a
TU91051 other upstream 595465 40133792 ~ 40142482 (+) False vps33a
TU90883 other upstream 1323966 39410238 ~ 39413981 (+) False G68023
TU91208 other downstream 89202 40867247 ~ 40897108 (+) True G68285
TU91230 other downstream 166488 40944533 ~ 40949978 (+) False trpm6
TU91231 other downstream 171475 40949520 ~ 40949978 (+) False trpm6
TU91239 other downstream 246954 41024999 ~ 41038738 (+) True G68309
TU91293 other downstream 415213 41193258 ~ 41207379 (+) False anxa1a

Expression Profile