RNA id: XM_039804395.1


Basic Information

Item Value
RNA id XM_039804395.1
length 7154
RNA type mRNA
GC content 0.56
exon number 44
gene id snrnp200
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 40566070 ~ 40642169 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGCAGCggcttgttgtgtgtgtgctcgcgTGTGTTAGCCGTTAGCACTTTTGAAACGTATGAGAGACGCATCAGTGAGAGAAACTCGGACATATTGGAAAACAGTCTCATGCTACAAATCTAAAACCTGCGCCGATGTTTGCAGCGTCTCCCTAAAAGGACAGAGTGAGGTCAACTCTGTGGATTTTTTTAGTCGCATTTAGTTAAAAAGTGtattaaaagttaaaagctAAGAGAAAGAACAGGCACCATGGCGGATGTTACTGCGCGTAGCTTACAGTACGAGTACAAAGCGAACTCTAACTTGGTGTTACAAGCGGATCGCTCTCTGATCGACCGCACGCGGCGAGATGAGCCCACCGGAGAGGTTCTGTCCCTCGTGGGGAAACTGGAGGGGACCAAGATGGGCGACAAGTCCCAGAGGACCAAACCTCAGAAGCTGGAGGAGAGACGAGACAAGAGGCGAAAAAGAGACGAGGACCGGCACGACATCAACAAGATGAAGGGCTACACCCTCCTGTCTGAAGGCATCGACGAGATGGTGGGCATCGTGTACAAGCCCAAAACCAAAGAGACCCGAGAGACGTACGAGGTGTTGCTGAGCTTCATCCACGCCGCTCTGGGAGATCAGCCGCGTGATATCCTGTGCGGCGCGGCCGACGAAGTATTGGCGGTGTTGAAGAACGATAAAATGAGGGACAAGGAGCGGCGCCGGGAGGTGGAGCAGCTTCTCGGGCCGGCCGATGACACGCGCTACCACGTGCTGGTCAACCTGGGCAAAAAGATCTCCGACTACGGAGGGGACAAGGACCTGCAGAACATGGATGACAACATCGATGAGACGTACGGTGTGAATGTCCAGTTTGAGTCAGACGAGGAGGAGGGCGATGAAGACCAGTTTGGAGAAGTCCGAGACGAACACTCGGATGAAGACAGCGAGGGAGAGGAGGCTGGAGTGGGCTGCGCTCTTTCAGCCAATCTCGGGGCCACAGGCGACGTGATGACCGTGAAGAAGAAGGACCTCCATCCTCGAGACATCGACGCCTTCTGGCTCCAGCGCCAGCTCAGCCGTTTCTACGACGATGCCATCGTCTCCCAAAAGAAGGCTGACGAAGTCCTAGAAATCCTCAAGACCGCCAGCGATGACCGAGAGTGTGAGAACCagctggtgctgctgctgggctTCAACACCTTCGATTTCATCAAAATCCTCCGCCAGCATCGCCGCATGATCCAGTATTGTACCATGCTGGCGAGCGCTCAGAGCGAGGCGGAGAAGGAGCGCATCACAGGAAAGATGGAGTCTGACCAGGAGCTGTCGAAGATCCTGTACCAGCTGCAGGAGACGGAGAAGGAGGACATCATCCGGGAGGAGCGATCTCGCCGGGAGAGGTTGAGGAAGTCTCGCGCTGACGACGCCATGGACGTCGACCACGGAGAGTCGATGGCCCCCAGACAGCTGCTGGACCTCGACGACCTGGCCTTCACCCAGGGGAGCCACTTCATGGCCAACAAGCGCTGCCAGCTGCCGGACGGCTCGTTTCGCAAACAGCGCAAAGGTTACGAAGAAGTCCACGTGCCCGCCCTCAAGCCCAAGCCCTTTGCTGACGATGAGGTGCTCGTTCCCATCGAGAAGCTGCCGAAATATGCGCAGGCTGGATTTGAAGGGTTCAAAACCCTGAACCGCATCCAGAGCAAACTGTACAAGACGACCCTGGAGACAGACGAGAACCTGCTCGTGTGTGCGCCTACGGGAGCCGGTAAGACCAACGTGGCTCTGATGGCGATGCTGAGAGAGATCGGAAAGCACATAAACCTGGACGGGACCATCAACGTGGACGACTTCAAAATCATCTACATTGCTCCGATGCGTTCACTGGTACAGGAGATGGTGGGAAGTTTCAGCAAGCGCTTGGCCAGTTACGGCATCACGGTGTCGGAGCTGACGGGCGACCACCAGCTCTGTAAGGAGGAGATCAACGCCACTCAGATCATCGTCTGCACCCCCGAGAAATGGGACATCATCACacggaaagggggagagagaaccTACACCCAGCTAGTGAGGCTCATCATCATCGATGAGATCCACCTTCTCCACGACGACCGCGGCCCGGTGCTGGAGTCCCTGGTTGCCAGGACGATCCGAAACGTGGAGCTGACCCAGGAGGACGTGCGTCTGCTCGGACTCAGCGCCACGCTGCCCAACTACGAGGACGTGGCCACCTGCCTGCGCGTTGACCCCGCAAAGGGACTCTTCTACTTCGACAACAGTTTCCGCCCCGTGCCTCTGGAGCAGACTTACGTCGGCATCACCGAGAAAAAGGCCATCAAGCGTTTCCAGATCATGAACGAGATTGTCTATGAAAAGATCATGGAGCATGCTGGGAAGAACCAGGTGCTAGTTTTTGTCCACTCCAGGAAGGAGACCGGGAAAACCGCCAGGGCCGTGAGGGACATGTGTTTGGAGAAGGACACGCTGGGTCTGTTCCTCAGGGAGGGCTCGGCTTCCACCGAAGTGTTGAGAACTGAGGCGGAGCAGTGCAAGAACCTGGAGCTGAAGGACTTGCTGCCCTACGGCTTTGCGATCCACCACGCCGGTATGACCAGAGTGGACCGTACGCTGGTGGAGGATCTGTTCGCCGATCGGCACATCCAGGTCCTGGTGTCCACGGCTACTCTGGCCTGGGGAGTCAACCTGCCGGCACACACCGTCATCATCAAGGGCACTCAGGTGTACAGCCCCGAGAAAGGCCGATGGACCGAACTCGGAGCCCTGGACATCCTGCAGATGCTCGGTCGAGCCGGCCGTCCTCAGTACGACACCAAGGGAGAGGGGATCCTGATCACGTCTCACGGAGAGCTCCAGTACTACCTGTCTCTGCTCAACCAGCAGCTGCCCATAGAGAGCCAGATGGTGGCCAAGCTGCCCGACATGCTCAACGCCGAGATAGTGCTGGGCAACGTGCAGAACGTGAAGGACGCCGTGAACTGGCTCGGCTACACCTACCTGTACGTGCGCATGCTCCGCAACCCCACCCTGTACGGCGTCTCCCACGACGACAGGAGTTCAGACCCGCTGCTGGAGAGACGCAGGACGGACCTGGTGCACACGGCCGCCAACGTCCTGGACAAGAACAACCTGGTCAAATACGACAAGAGGTccggcagcttccagGTTACCGACCTGGGACGCATCGCGAGTCACTTCTACATCACTCACGACTCCATCCAGACGTACAACCAGCTGCTGAAGCCCACGCTCAGCGAGATCGAGCTCTTCAGAGTCTTCTCCCTGTCCTCCGAGTTCAGGAACATCACCGTCAGAGAGGAGGAGAAGCTGGAACTTCAGAAGCTGCTGGAAAGAGTTCCCATTCCCGTGAAGGAAAGCATCGAGGAGCCCAGTGCTAAGATAAACGTGCTGCTGCAGGCGTACATCTCTCAGCTCAAACTGGAAGGCTTCGCTCTCATGGCCGACATGGTGTACGTCACACAGAGTGCTGGAAGATTAATGCGGGCGATATTTGAGATCGTTCTCAACAGAGGCTGGGCTCAGCTGACGGACAAGACCATGAATCTCTGCAAGATGATCGACAAGAGAATGTGGCAGTCGATGTCTCCGCTGCGACAGTTCAAGAAGCTTCCAGAGGAAGTCATCAAGAAGATCGAGAAGAAGAACTTCCCCTTTGAGCGTCTCTACGACCTGAACCACAATGAGATCGGTGAGCTGATCCGAATGCCGAAAATGGGGAAGACCATCCACAAATACGTCCACCAGTTCCCCAAACTGGACCTGGCTGTCCACCTGCAGCCAATCACGCGCTCCACACTGAAAGTGGAGCTCACGGTCACACCAGACTTCCAGTGGGATGACAAGATTCACGGGTCCTCCGAGGCTTTCTGGATCCTGGTTGAGGACGTGGACAGCGAGGTCATCCTCCACCACGAGTACTTCCTGCTCAAAGCCAAGTACGCCCAGGACGAACACCTGGTGACGTTCTTTGTGCCGGTGTTCGAGCCTCTGCCGCCGCAGTACTTCATCCGCGTGGTCTCCGACCGATGGCTCTCGTGCGAGACTCAGCTCCCGGTATCCTTCCGTCACCTGATCCTACCGGAGAAGTACCCGCCCCCGACGGAGCTGCTGGACCTGCAGCCCCTGCCCGTCACCGCTCTCAGAAACTCAGCCTTCGAGGCGCTCTACCAGAACAAATTCCCCTTCTTCAACCCCATCCAGACGCAAGTGTTCAACGCCGTGTACAACAGCGACGATAACGTGTTTGTGGGCGCTCCCACCGGCAGTGGGAAGACCATCTGTGCGGAGTTTGCTATTCTGAGGATGCTGCTGCACAACGCCGAAGGTCGCTGCGTCTACATCACCCCGATGGAAGCGCTGGCCGAGCAGGTGTTTGTTGACTGGCACCAGAAGTTCCAGGACATCCTGAACAAAAAGGTGGTGCTTCTGACGGGAGAAACCAGCACCGATCTGAAGCTCCTGGGGAAAGGGGACATTATCGTCAGCACCCCCGACAAATGGGACATCCTGTCTCGGCGCTGGAAACAGAGGAAGAACGTCCAGAACGTCAGCCTCTTCATCGTGGACGAGACGCACCTGATCGGAGGAGAGAACGGACCTGTGTTGGAAGTCATCTGCTCCAGGATGAGGTACATCTCCTCTCAGATCGAGCGTCCCATCCGCATCGTGGCGCTCAGCTCGTCTCTGTCCAACGCCAAAGACGTGGCCCACTGGCTCGGCTGCAGCACCACGGCCACGTTCAACTTCCACCCCAACGTCAGACCGGTTCCTCTGGAGCTGCACATCCAGGGCTTCAACGTGAGTCACACTCAGACTCGCCTGCTGTCCATGGCGAAGCCCGTCTACCACGCCATCATGAAGCACTCTCCCTCCAAGCCGGCCGTGGTGTTCGTCCCGTCCCGCAGACAGACGCGCCTCACGGCCATCGACATCCTCACCTTCTGCGCCGCGGACGTGGTTCCTCAGAGGTTCTTACATTGCACCGAGAAGGACCTCGTTCCCTTCCTGGAGAAAATCAACGACTCCACTCTGAAAGAGACGCTGGCCAACGGCGTCGGCTACCTGCACGAGGGCCTGTCTGCCACCGAGCGCAGAATAGTGGAGCAGCTCTTCAACTCGGGTGCTGTTCAGGTGGTGGTTTCCTCTCGGTCGCTCTGCTGGGGCATCAACATCTCCGCACACCTCGTCATCGTCATGGACACCCAGTACTACAACGGCAAAATCCACGCGTACGTGGACTATCCGATCTACGACGTCCTGCAGATGGTGGGCAAAGCGAACAGACCCATGCTGGATGACGAGGGCCGCTGTGTTATCATGTGTCAGGGCTCCAAGAAGGACTTCTTCAAGAAGTTCCTGTACGAGCCGCTGCCGGTGGAGTCTCACCTGGACCACTGCCTCCACGACCACTTCAACGCCGAGATCGTCACCAAGACGGTGGAGAACAAGCAGGACGCCGTGGACTACCTGACGTGGACGTTCCTCTACCGCCGCATGACCCAGAACCCCAACTACTACAACCTGCAGGGCATGTCCCACCGCCACCTGTCGGACCACCTGTCGGAGCTGGTGGAGCACACGCTGCACGACCTGGAGCAGTCCAAGTGCATCAGCATCGAGGACGAGATGGACGTGGCGCCGCTCAATCTGGGCATGATCGCTGCCTACTACTACATCAACTACACCACCATCGAGTTGTTCAGCATGTCCCTGAACGCCAAGACAAAGATCCGCGGATTAATCGAGATCATCTCTAACGCTGCCGAGTACAAAAACATTCCCATCAGGCACCACGAGGACCAGCTCCTCcgacagTTGGCGCAGAAAGTGCCGCACAAACTGAACAACCCGAAGTTCAACGACCCGCACGTGAAGACcaacctgctgctgcaggcgcACCTCTCGCGCATGCAGCTGAGCGCCGAGCTGCAGTCGGACACCGAGGACATCCTCAGCAAGgCGGTGCGGCTGATCCAGGCCTGCGTGGACGTGCTGTCCAGTAACGGCTGGCTGAGTCCGGCTCTGGCAGCGATGGAGCTGGCTCAGATGGTCACCCAGGCGATGTGGTCCAAGGACTCGTACCTCAAACAGCTGCCCTTCTTCACCTCCGAGCACATCAAGCGCTGCACAGACAAGGGCGTGGAGAGCATCTTCGACATCATGGAGATGGAGGATGAGGAGCGAACGGCTCTGCTGCAGCTGTCCGACGCCCAGATGGCCGACGTGGCTCGCTTCTGTAACCGCTACCCCAACATCGAGCTGTCGTACGAAGTGGCCGAGAAGGACAACCTCAAGAGCGGGAGTCCAGTCCTGGTCCAGGTCCAgctggagagggaggaggaagtgACCGGGCCCGTCATCGCGCCGCTCTTCCCCCAGAAACGTGAGGAGGGCTGGTGGGTGGTGATCGGAGACCCCAAATCTAACAGCCTGATCTCCATCAAGAGGCTGACGCTGCAGCAGAAAGCCAAGgtcaaATTGGACTTCGTTGCCCCGGCGATGGGCGTCCACAACTACACGCTGTACTTCATGAGCGACGCGTACATGGGCTGCGACCAGGAGTACAAGTTCAGCGCCGACGTGAAGGAGGCCGACAGCGACGGAGACAGCGACTCGGACTAGAAGACTCGACTGCGGTCTGTCTGCGCCCGTTGGTTTCATCAGAACTTAGTTTTCTTCGTGTAGATATTAAATACTGTAAGCGTGTCGTCGTTCTTCTCCCTGTGAAAATAAGcagttttatttgtttggtttttttttttccattttaaaatcaacCGAATGATGTAGAACAGTCCAGAAGTGGAGCGTACAGGGAAATACTCCGGAAACTCGGCTCTCTGAAGGACCAATCACGGTGTTTGGGGTCTCTACGATCTACACACAGTTTTTGAGTCCGATTTTGAAATTTGATacgtgattaaaaaaataaaaagttcctGTGCGCTTATTCCAGATTGGGTCTTTAACTACGGACGTGAGACTGTCCGGTTATATTTCCTTTCTGGACTTAATAAACATTGTTTTGTTATGAAATCTTGATTCTTGGACTTTgtggaaatgtttttaaaatgatttgctgtctggagtattttttttgcaataaaGAGAAGCCACACAA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12854 SNRNP200, BRR2; pre-mRNA-splicing helicase BRR2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91033 lncRNA upstream 7148 40557519 ~ 40558922 (+) True G68148
TU91034 lncRNA upstream 7148 40557519 ~ 40558922 (+) False G68148
TU91035 lncRNA upstream 7148 40557519 ~ 40558922 (+) False G68148
TU91129 lncRNA upstream 81957 40483677 ~ 40484113 (+) True G68222
TU91124 lncRNA upstream 100445 40463203 ~ 40465625 (+) True G68217
TU91138 lncRNA downstream 2680 40644849 ~ 40645154 (+) True G68231
TU91142 lncRNA downstream 6936 40649105 ~ 40718646 (+) True G68233
TU91158 lncRNA downstream 64843 40707012 ~ 40707517 (+) True G68246
TU91164 lncRNA downstream 79590 40721759 ~ 40722296 (+) True G68249
TU91166 lncRNA downstream 83151 40725320 ~ 40725813 (+) True G68251
XM_039804393.1 mRNA upstream 10004 40534048 ~ 40556066 (+) True zfand5a
XM_039804394.1 mRNA upstream 10004 40534048 ~ 40556066 (+) False zfand5a
XM_039804050.1 mRNA upstream 59584 40400615 ~ 40506486 (+) True igsf9b
XM_039802032.1 mRNA upstream 167947 40379395 ~ 40398123 (+) True tmem230b
XM_039804552.1 mRNA upstream 360534 40193668 ~ 40205536 (+) True adra1aa
XM_039803455.1 mRNA downstream 25156 40667325 ~ 40678275 (+) True tmem127
XM_039803456.1 mRNA downstream 42070 40684239 ~ 40693059 (+) True es1
XM_039804051.1 mRNA downstream 56747 40698916 ~ 40728821 (+) True tmc1
XM_039802124.1 mRNA downstream 95778 40737947 ~ 40778045 (+) True tmc2b
XM_039802125.1 mRNA downstream 95778 40737947 ~ 40778045 (+) False tmc2b
TU91093 other upstream 183620 40379417 ~ 40382450 (+) False tmem230b
TU91064 other upstream 331479 40233473 ~ 40234591 (+) True G68173
TU91053 other upstream 415393 40144759 ~ 40150677 (+) False vps33a
TU91051 other upstream 423588 40133792 ~ 40142482 (+) False vps33a
TU90883 other upstream 1152089 39410238 ~ 39413981 (+) False G68023
TU91208 other downstream 225078 40867247 ~ 40897108 (+) True G68285
TU91230 other downstream 302364 40944533 ~ 40949978 (+) False trpm6
TU91231 other downstream 307351 40949520 ~ 40949978 (+) False trpm6
TU91239 other downstream 382830 41024999 ~ 41038738 (+) True G68309
TU91293 other downstream 551089 41193258 ~ 41207379 (+) False anxa1a

Expression Profile