RNA id: TU91033


Basic Information

Item Value
RNA id TU91033
length 1277
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G68148
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 40557519 ~ 40957793 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atctgagtctgtcagcggcaacaacagaacttttagtggacgctgactgatgctgaacatctgtcctgtagggttacatcaCAGCCCGGTTCACAgctgctggttacagcgttGTTACTCAACACTGGACCAGTGTAAAGATAgttgttcacatcagtcacttagacaccaataGATGGGAAACAGGTTGAAAAAGACACAACCTTTCTAAACAACAATATTTTCGGGGCATGGGTGAATGGGGATAAAAGCATGAGTTACTTTTCATCTGCGTTAGAAATATTTGGCATCACTGAACTTGGAGGgtttcagacattttaatttgctGAGAGACAATTATTTGTTATGTTTtaattagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagggagagtgtgtgtgttggagagggggagagagagggagagtgtgtgtgtgtgtgtgttagagagtgtgtgtgtgtgtgtgtgtgttagagagggagtgtgtgtgtgtgtgtgtgtgtgtgttagagagggagagtgtgtgtgtgtgtgttagagagggagagtgtgagtgtgtgtgttagagagggagagtgtgagtgtgtgtgtgtgttagagagggagagtgtgtgtgtgtctgtgtgtgtattagagagagtgtgtgtgtctgtgtgtattagagagggagtgtgtgtgtgtgtgtgttagagggagtgtgtgtgtgtgtgtgtgtgtgtgtgttagagagagtgtgtgtgttagagagattgtgtgtgtgtgtgtgtgtgtgtgtgtgttagagagagtgtgtgtgttagagagattgtgtgtgtgtgtgtgtgtgttagcagcACATGTTTACAAAACTACAGGAGCATGCCAGCATTAGATTTatggaaaaataataaataccaAGATTTAGATGTAACTTCTCATCTGTCTAACcgctatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggagaagtgTTTCCATGGCTGCCTGACCCTGACCTATGTTTATGAGTTGTGTTAATCCctcctttttaattttaatttcccCGTAAGGatggtttttcatttaaaagacAACTGTATGTATCCGTTTGAGTTTCTCCCCTGATTCTTAGTTGTATGCaaatttgtacaaaaaaaaacatgaaaaaacaacaaactgtgtTGATATTTATGTATTGCATATAATCTTGCTATCCAGCATTACGACAGAATAGTATCATGTAAATAAAACTGTACAGAGAGACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91129 lncRNA upstream 73406 40483677 ~ 40484113 (+) True G68222
TU91124 lncRNA upstream 91894 40463203 ~ 40465625 (+) True G68217
TU91118 lncRNA upstream 101472 40455211 ~ 40456047 (+) False G68211
TU91117 lncRNA upstream 102000 40447645 ~ 40455519 (+) True G68211
TU91121 lncRNA upstream 102518 40454644 ~ 40455001 (+) True G68214
TU91135 lncRNA downstream 20022 40578944 ~ 40599036 (+) True G68228
TU91137 lncRNA downstream 48936 40607858 ~ 40613432 (+) True G68230
TU91138 lncRNA downstream 85927 40644849 ~ 40645154 (+) True G68231
TU91142 lncRNA downstream 90183 40649105 ~ 40718646 (+) True G68233
TU91158 lncRNA downstream 148090 40707012 ~ 40707517 (+) True G68246
XM_039804393.1 mRNA upstream 1453 40534048 ~ 40556066 (+) True zfand5a
XM_039804394.1 mRNA upstream 1453 40534048 ~ 40556066 (+) False zfand5a
XM_039804050.1 mRNA upstream 51033 40400615 ~ 40506486 (+) True igsf9b
XM_039802032.1 mRNA upstream 159396 40379395 ~ 40398123 (+) True tmem230b
XM_039804552.1 mRNA upstream 351983 40193668 ~ 40205536 (+) True adra1aa
XM_039804395.1 mRNA downstream 7148 40566070 ~ 40642169 (+) True snrnp200
XM_039803455.1 mRNA downstream 108403 40667325 ~ 40678275 (+) True tmem127
XM_039803456.1 mRNA downstream 125317 40684239 ~ 40693059 (+) True es1
XM_039804051.1 mRNA downstream 139994 40698916 ~ 40728821 (+) True tmc1
XM_039802124.1 mRNA downstream 179025 40737947 ~ 40778045 (+) True tmc2b
TU91093 other upstream 175069 40379417 ~ 40382450 (+) False tmem230b
TU91064 other upstream 322928 40233473 ~ 40234591 (+) True G68173
TU91053 other upstream 406842 40144759 ~ 40150677 (+) False vps33a
TU91051 other upstream 415037 40133792 ~ 40142482 (+) False vps33a
TU90883 other upstream 1143538 39410238 ~ 39413981 (+) False G68023
TU91208 other downstream 308325 40867247 ~ 40897108 (+) True G68285
TU91230 other downstream 385611 40944533 ~ 40949978 (+) False trpm6
TU91231 other downstream 390598 40949520 ~ 40949978 (+) False trpm6
TU91239 other downstream 466077 41024999 ~ 41038738 (+) True G68309
TU91293 other downstream 634336 41193258 ~ 41207379 (+) False anxa1a

Expression Profile