RNA id: TCONS_00007519


Basic Information

Item Value
RNA id TCONS_00007519
length 261
lncRNA type lincRNA
GC content 0.39
exon number 2
gene id XLOC_003923
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 9285823 ~ 9286476 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTTTATGGGACCTGCTGTTATGTTCTCCATCATTGCTAGCTCCTGCTGATGTTGTTTTCTGTAATGCGTTCATCTTATACAAACCATTACATCTTATTCATTTCTCACTACCATTACCCATAATTGAGCAATCTGATGATTATgttgaagaaaataaatatttcaaacgtCAACACTTCTCCTGCCCTCCTGATTCTCTGACCGGAATCTGGTCCATATTTGGCCGCCTCAACCAGTGGAAAATTTACATGTAGTAAGGT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000162979

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007518 lncRNA downstream 18726 9095130 ~ 9267097 (-) False XLOC_003922
TCONS_00008763 lncRNA downstream 770073 8483837 ~ 8515750 (-) True XLOC_003920
TCONS_00008762 lncRNA downstream 770075 8483837 ~ 8515748 (-) False XLOC_003920
TCONS_00008761 lncRNA downstream 770130 8477025 ~ 8515693 (-) False XLOC_003920
TCONS_00007513 lncRNA downstream 770445 8476961 ~ 8515378 (-) False XLOC_003920
TCONS_00007520 lncRNA upstream 5805 9292281 ~ 9293351 (-) False XLOC_003924
TCONS_00008764 lncRNA upstream 6214 9292690 ~ 9293411 (-) True XLOC_003924
TCONS_00008453 lncRNA upstream 121195 9407671 ~ 9408005 (-) True XLOC_003925
TCONS_00008454 lncRNA upstream 223713 9510189 ~ 9513271 (-) False XLOC_003922
TCONS_00008765 lncRNA upstream 224093 9510569 ~ 9522566 (-) False XLOC_003922
TCONS_00007515 mRNA downstream 502952 8635785 ~ 8782871 (-) True XLOC_003921
TCONS_00007512 mRNA downstream 934878 8306007 ~ 8350945 (-) True XLOC_003919
TCONS_00007511 mRNA downstream 964955 8303941 ~ 8320868 (-) False XLOC_003919
TCONS_00007509 mRNA downstream 996898 8284686 ~ 8288925 (-) False XLOC_003918
TCONS_00007507 mRNA downstream 1014449 8267118 ~ 8271374 (-) False XLOC_003916
TCONS_00007522 mRNA upstream 277678 9564154 ~ 9948487 (-) False XLOC_003926
TCONS_00007521 mRNA upstream 277678 9564154 ~ 9948487 (-) False XLOC_003926
TCONS_00007523 mRNA upstream 521728 9808204 ~ 9808356 (-) False XLOC_003926
TCONS_00007524 mRNA upstream 660206 9946682 ~ 9985415 (-) True XLOC_003926
TCONS_00007525 mRNA upstream 1101827 10388303 ~ 10456553 (-) False XLOC_003928
TCONS_00007494 other downstream 1159628 8111369 ~ 8126195 (-) True XLOC_003913
TCONS_00007477 other downstream 2169460 7116247 ~ 7116363 (-) True XLOC_003904
TCONS_00007463 other downstream 2337805 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007456 other downstream 2503747 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007441 other downstream 3079234 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007548 other upstream 2039046 11325522 ~ 11331050 (-) False XLOC_003936
TCONS_00007549 other upstream 2044249 11330725 ~ 11331090 (-) True XLOC_003936
TCONS_00007551 other upstream 2052328 11338804 ~ 11339100 (-) True XLOC_003938
TCONS_00007552 other upstream 2081118 11367594 ~ 11367890 (-) True XLOC_003942
TCONS_00007553 other upstream 2083979 11370455 ~ 11370653 (-) True XLOC_003943

Expression Profile

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