RNA id: AMCG00003599


Basic Information

Item Value
RNA id AMCG00003599
length 5366
RNA type mRNA
GC content 0.42
exon number 10
gene id AMCG00003599
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11316201 ~ 11343024 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGAGCCTCAGGCTCAGCTATTTTGAAAACCTCCTCACAAGCTcttctgtttaaaattaaagattGAGTCCCTTTTAACCCTGAATAGCAAGAGCCTTAAGATACAGTCACTGGTCTTTGATCTCTTTTTATCCTTTTAATGGCATAGTGACCAGAAGGTCTACGCCTACAGCGCAGAAGCTCCGTTGAACTTGAGGACTTCACCGCCCGCCGCGCCGCGCCGACACAGACCCGCCGCCGACATGGGGAGGGATGCGCGCCGCCTCGCCTCGGTGCCCCCGgcctgcctgctgctgctgctgggctgGAGGCACCTGTGCGTGGCCGGGTTTGAGCTCACCCTGCTGCACACCAACGACGTCCATGCCCGGGTCGAGCAGACCAGCCGGGACTCGGGCAAGTGCAGTAGCGCGGACTGCTACGCCGGGGTGGCCCGCAGGTTCACGAAAGTGGCCGAGCTGCGGAGGTCGGAGCCCAACGTGCTGCTGCTGGACGCCGGGGACCAGTTCCAGGGCACCGTGTGGTTCAACTACTACAAGGGCGCCGAGGCTGCGTATTTCATGAATAAACTCAAATACGACGCCATGGCTTTGGGCAACCATGAATTTGACAATGGAGTGGATGGCTTAATTGACCCATTTCTGAAGCAAGTCAATTGCAAAGTACTAAGTGCCAATATTAAGCCAGACTCAACACTGGCTCCAAAAATAAGTGGGCACTACTTACCATAcgcaatatttaatttcacctcGGAGAAAGTGGGTGTAGTAGGATATACATCAAGAGAAACTCCAGCTCTGTCACTTCCAGGTCCAAATTTAGTTTTTGAAGATGAAATCGAGGCCTTGCAATTACAGGTAGACAAGCTAACCACCCTAGGAGTGAATAAAATCATTGCTCTGGGACACTCTGGCTTTGAAGTGGACAAAGAGATTGCCAAGAAAGTCCGGGGCATAGACGTGGTTATTGgtggacacacaaacacattcctGTACACAGGTAGCCCCCCATCGTCAGAGGTCCCAGCAGGCAGTTACCCCTTCATGGTAAATTCGGTTGATGGTCGACAAGTGCCTGTTGTTCAGGCTTATGCCTTTGGGAAATACCTTGGATACCTGAAAGTAACCTTTGATGATCAGGGTAATGTGCTGAAGTCAACTGGGAATCCTATTTTGCTGAATCGTGACATAAAAGAAGattcTGGAGTTCTTGGCGATGTACAAAAGTGGAGAACGAACCTGGCAAATTACTCCGCCCAGATTGTGGGGGAGACCTTGGTTTACCTCAATGGTACTTTTGAAGAGTGCCGTTTTCGGGAGTGCAACTTGGGAAATTTAATTTGTGATGCAATGATTAGGAATAATATCAAGTACCCAGACGAGCTCCAGTGGAACCACGTCAGCGCCTGCATCCTGAATGGTGGCACTATACGATCCTCCATCGATGAGCACAGTAGAAACGGTATACATGTTGAATTTGATATATCCAGACCCCCTGGGAGCCGAGTCACTGACCTACAGATTCTCTGCACAGAGTGCCGTGTGCCCAAATATGTGCCAGTCCAACCAGGCAAAGTCTATAAACTCGTTCTTCCATCCTATACAGCCGATGGAGGAGATGGATTTTCAATGATAAAGAATGAAAAGCTGAAACATAACAGTGgtGATCTTGACATAGCCGTTATTTCTTCCTACATCGCTGAAATGAAGAGGGTCTACCCAGCAGTCGAAGGCCGAATCAAGATTTCAAACACAGGAATCATGACCGTGGGACAGTTGAAGATGCTGTTACTGGCACTGGCCTTCGCTCTGTCTTTCATTCTCTAAGACTGGTGTTACAGTAGGTCCCTCCCAGGACTCGAGTGCACTGAATTGCCACATTCATGTGATCATCAACCTGCTAATGAATTGTACGTAAATTCATATAACCACTTAGCTTCTCCATAAAGATGAATACAACAATAACCTGATGAAATTAGCATGCCCTgtaaagtacttttttttgttttaatcatttaatttgacCATTAAACACCAGATTTGTGGGCGTTCTGTCAGACATAATAAAGGAAAGACAAAAGCTTATGAACATTCCTATATAACACACAGCTCAGGGTCCAGGGCCTGGAATGATGAATAGATCAAGACCAGgtgtattgtattttcacaAAACTACTTTTGTACCTCTTTTACCAACCACAAAGGAGCAGTGCAAGCCAAGATCATTTGGagtttaatgtctttttttatggATTTCTAAATGCTGTGTCTCCAGTCAGTGGCACGTATGTTCATAGTATCAGACCAACTTCAACAAACCAGTTATATAATGGCAAATTTGTCACTTTGTAGTGCTTTAGTTGGGCTGTAGCTTTAAGTGTCAACCCAGTAGAAAAATGCCTTCAGGCACAGAACCAGTGGTGCATGAAGAGAATTATGAGTGTTTAGTTCTGTACAATGTTTGCTTTTAAgatgcaatacattttgtatttcatgttttaaaacttaGAGCTCATGAGACTTCAGAATGGAAATCTGTGTCTTACTTGTACGTTGCAGCCAATTGTGCAGCTTGCCATGCCTGGATGTAATGGTAACACAGTTAAAAATCACACTTATACCCACATGCTTTGATTCCGATCGATCTGCTATTGTACGGGATCAAAGCCAGTCATGAGAAACATGACTGTgtctcaaaaacaaacatgacccCTCGCTCATAAAAGTACTGTTCTTGTGCATCAGCGATGTTTGAAAAGCAATGTGTGTATTGAAATTgagataaaaagaaataaatttGTATATGATTATTgtgatgattattttattgcttgGCAGATGCCaatatccagggtgacttacaggttaCCCTAGCATTACaaaggttaattaaaattaatacaaattaagcattaatacAAAGTACAGTCGACAACGTAAGAACATGACGCGTCATTTGCCGGCATtcgttttcctgctccattcacacacatCTATTGCTGCAAAATTGCTGGCATTTAGACTAGGACCCGCGCTGGAAAATTGCAGGCAgtaacccattcacacagaccttggtCTTGGTATATttggtatattttaattgattgtctTCCACTGAAAGAATGCAATTAAGCACATAACAATTAAGTCATTTGAATGAAATCCCACAGTCACTGTAGCTTACACAGAAAAGAGTGCTTGCTCCTTTGCTCAAGGCCAAAGGTGGAGGTGgcagttaaaaattaaaaaggatttCGAAGGAATTGAGATCATTCAAGGCTTTTATTGCCTTCTGAAGAAATATTCTCCTTATCTCCTGCCTTAACACACAATAGCCCAGTGATTAAGCTGAAGTGAAAATTAGTCATCTTGTCGTTGTACTGTAAGGTAGAGCAGTCGTCgtagcaaataaacaaactacattttgaGTAAAACTATCATACATCCACTGGTTAACATGTACATCAATCTGCCCTGACCATTTACTCTAACAAGCAAAAGAGGGATTTATAGGCTGCAGAAAGAAAATAGCTGTGTGCTGATGAGTCCAGTCAGATGCAAAAAATAGCATCCCAGACTAGTAAAACAGAGGTAAAAGTGCAGCCTTGGAAAAAATAAGTTCTGGGAAGCTTTGCAGTAACAAGTGTGCAACACGTTTGGCATGTGGGTATTGCAATCTGCAAACCTCAGACTGGGTGTGTCGGGTCGTGTggggtttgttttccttttgaacCTGACGTTGCCAAGTTAGACTCCGTCCTACTAACCACAGCAAAATAGCTCCAACAGAACATATAGTCTGTCATTTTAAACCGAAAACATGAACGTAACCAAACACTGCCATGTCACTGGGaagattcatatatttatttaaaaatctaacaAAGACCTGAGCATCATAAATATCAGAAGGGGCGTAGTAAGAAGAAATGTGAGTTACAAAGTTATATCCCTGGGCTGAAGGATCCAAACAATATGGACATAAGATTCGCACAGGAAAGAGACTTGTACTTTACTCAAATGGGTCTGGCAATGAAGCAGAGAACTTGtcctcaaatgtatttattattgatccttttaacttttttctttgaaCACCACTATCCTCTTCTATCTCCTGGGAGATATGTGAAGGTCtcacttttttatttcagcttGAATAACAGTTTTGGAATAACTGGAATAGAATCAGTTTCGAACTGCAGTTGTGGGTGAAAATACTTAAACAGAGTAAATACGATTgtggatttttgtttgttcgaTTGTAGGTTTGCACTTTCTAAATGAGATGTACATAAAATGGAATTTCCCGAAATGTAGCTATATAGTCTGAAgtggtatatttttatttccttgtaaCTCATATGGGGAACAACGCTTCTGTGTTAACACTGTACCAAAGCCACACACATCCTCTTGTGCCAAAAGCTGGAATAGcaggttttaaaatgctgtattgACTGTCTGTATTCTCACAGCTGTCCCTGAGCCTGGAAACTAAAAGAGACATTGTCCATCCAGCACTGCTAATTATGATTTGGGTGATGGGGAATGGTCATgaacaaaactgctttttttcAGGAGGAGAGGTTAGCTTGTCATCTGTGTATAGTCAGGAACAAGGTCATGTTGGATCCAACAGAACAGAAGCAACAGTGTGATACTGTCGTCTTATTTTCTGCTTCTTTGACAATAGATACATCAAGCAGCTGGTATAAGAGACGACTATCGTTTTGAAATTGTGTGTCCTTGCTTTAGGTGTTTAGGAGGAGATATTCATTGcccactttatttttatattccaccGTTGCATCACTGCAGCCTATTGTGCAGTGGTGGGTTGTTAATTGCAGGGCTTCAATGTTACATAGATGTACACCAAGTACTGAAACAGAAAGCTCAGAAAAGATCAGTCACATCAGCCTCGTCTGCCCTACTTCtcgttttgttttctttgaaaccAGATCAACACGTTTCACTAGACTTTTACTACTAAAACATATATcgtataaaacatataaacagtATACACccccttttcacattttgttctcagTGCTTCAATTTCATGCATTTCTATGAGGATTTGTCCACTTATCTACTCGCCATACTcggttttattgtgaaaatatatttaacaattgaaaTATCATATTTGGATGAGTTTCCATGAGTTAATACATGGTGGGAGCAACTTTGGCAGCAGTTTCAGCTGTAAATCCGTTGGGAAAGGTCTCTTCCAACCACACCTAGATTTGGTAAGATTTGGCCTTTCTTCAACCTCTGTCATGTTCATTGaggagtgttgatggacagcaatctttcaagtcatgccacacattgtTGATTGGATTTGGCTCaaggct

Function

GO:

id name namespace
GO:0046688 response to copper ion biological_process
GO:0005488 binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K19970 NT5E, CD73; 5'-nucleotidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2254 lncRNA upstream 87926 11227959 ~ 11228275 (+) True G1891
TU2211 lncRNA upstream 265557 11050151 ~ 11050644 (+) True G1855
TU2056 lncRNA upstream 858436 10431664 ~ 10457765 (+) True G1747
TU2011 lncRNA upstream 1077940 10236856 ~ 10238261 (+) True G1706
TU1863 lncRNA upstream 1612723 9700557 ~ 9703478 (+) True G1574
TU2269 lncRNA downstream 24999 11368023 ~ 11403029 (+) True G1902
TU2326 lncRNA downstream 119314 11462338 ~ 11482931 (+) False AMCG00003604
TU2383 lncRNA downstream 227028 11570052 ~ 11570410 (+) True G1987
TU2400 lncRNA downstream 382059 11725083 ~ 11729991 (+) True AMCG00003614
TU2424 lncRNA downstream 470098 11813122 ~ 11831420 (+) True G2018
AMCG00003598 mRNA upstream 43041 11261733 ~ 11273160 (+) True AMCG00003598
AMCG00003593 mRNA upstream 183731 11107394 ~ 11132470 (+) True AMCG00003593
AMCG00003594 mRNA upstream 217241 11084163 ~ 11098960 (+) True AMCG00003594
AMCG00003591 mRNA upstream 267625 11025209 ~ 11048576 (+) True AMCG00003591
AMCG00003585 mRNA upstream 658628 10636488 ~ 10657573 (+) True AMCG00003585
AMCG00003603 mRNA downstream 106296 11449320 ~ 11460063 (+) True AMCG00003603
AMCG00003604 mRNA downstream 118639 11461663 ~ 11482496 (+) True AMCG00003604
AMCG00003606 mRNA downstream 147215 11490239 ~ 11491597 (+) True AMCG00003606
AMCG00003607 mRNA downstream 150928 11493952 ~ 11508306 (+) True AMCG00003607
AMCG00003608 mRNA downstream 167381 11510405 ~ 11515479 (+) True AMCG00003608
TU1883 other upstream 1535299 9777508 ~ 9780902 (+) True AMCG00003570
TU1763 other upstream 2052733 9255828 ~ 9263468 (+) True AMCG00003551
TU1569 other upstream 2663797 8649125 ~ 8652404 (+) True AMCG00003534
TU1202 other upstream 4821296 6487692 ~ 6494905 (+) True G1012
TU2334 other downstream 147161 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 230707 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 1694413 13037437 ~ 13042597 (+) True AMCG00003648
TU2754 other downstream 1812036 13155060 ~ 13156627 (+) False AMCG00003655
TU2954 other downstream 3075492 14418516 ~ 14419732 (+) True G2440

Expression Profile