GENE ID: --

Symbol Location Gene type Genome version Species
rrm2.1 -- -- -- Danio rerio

MARKER



EXPRESSION

Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
GSE158142 (15dpf) brain, eye baseline 15dpf, untreatment Progenitors (cluster: 4)
 marker
 DOI:10.1016/j.neuron.2020.09.023
PRJNA554650 (6.5dpf) brain baseline 6.5dpf, whole brain of nr1d1:VNP fish Progenitors (cluster: 16)
Progenitors (cluster: 8)
 potential marker
potential marker
 NA
NA
GSE158142 (5dpf) brain, eye baseline 5dpf, untreatment Progenitors (cluster: 3)
 potential marker
 NA
GSE158142 (8dpf) brain, eye baseline 8dpf, untreatment Progenitors (cluster: 3)
Progenitors (cluster: 7)
 potential marker
potential marker
 NA
NA
GSE151354 (nkx3.2 mutant) cartilage growth 21dpf, nkx3.2 mutant Chondrocyte-S-phase (cluster: 9)
 potential marker
 NA
PRJNA610520 (3.5dpf) caudal hematopoietic tissue baseline 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. Endothelium (cluster: 5)
 potential marker
 NA
PRJNA610520 (4.5dpf) caudal hematopoietic tissue baseline 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. Erythroid cells (cluster: 3)
 potential marker
 NA
GSE158849 (labeled) embryo baseline 6hpf, WT, 4sUTP injected (labeled) Ectoderm cells (cluster: 1)
 potential marker
 NA
GSE106587 (WT) embryo baseline 12hpf, 6 somites, wild-type TLAB embryo
GSE126647 (control) embryo baseline 1.17dpf, control nkx2.5:ZsYellow+ cells
PRJNA656271 (24hpf) embryo baseline 24hpf, FACS-isolated EGFP+ cells
PRJNA656271 (1.5dpf) embryo baseline 1.5dpf, FACS-isolated EGFP+ cells PMN progenitors (cluster: 1)
 potential marker
 NA
PRJNA656271 (2dpf) embryo baseline 2dpf, FACS-isolated EGFP+ cells
GSE168695 (5dpf) embryo baseline 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA640816 (2.9dpf) embryo baseline 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (5dpf) embryo baseline 5dpf, a single-cell transcriptome atlas for zebrafish development Neuron (cluster: 3)
 potential marker
 NA
PRJNA564810 (2dpf) embryo baseline 2dpf, a single-cell transcriptome atlas for zebrafish development Neuroblast (cluster: 3)
Neuron (cluster: 4)
 potential marker
potential marker
 NA
NA
PRJNA564810 (1dpf) embryo baseline 1dpf, a single-cell transcriptome atlas for zebrafish development Neuroblast (cluster: 1)
 potential marker
 NA
GSE161712 (M. marinum) granulomas disease adult, infected with bacteria of M. marinum Proliferating cells (cluster: 5)
Proliferating cells (cluster: 7)
 potential marker
potential marker
 NA
NA
GSE158142 (14hpf) head baseline 14hpf, 10 somites, untreatment Mid,hind progenitors (neural plate) (cluster: 1)
 potential marker
 NA
GSE158142 (16hpf) head baseline 16hpf, 14 somites, untreatment Hindbrain rhombomere (cluster: 1)
 potential marker
 NA
GSE158142 (18hpf) head baseline 18hpf, 18 somites, untreatment Cycling progenitors (cluster: 1)
 potential marker
 NA
GSE158142 (1.5dpf) head baseline 1.5dpf, untreatment Retina neuroblasts (cluster: 6)
 potential marker
 NA
GSE158142 (3dpf) head baseline 3dpf, untreatment Neuron (cluster: 3)
 potential marker
 NA
PRJNA608912 (kit_7dpi) heart regeneration 5mpf, kit mutant, 7 days post injury Erythroid cells (cluster: 14)
 potential marker
 NA
GSE123241 (wild type) neuromast baseline 5dpf, wild type during sensory hair cell regeneration, lateral line sensory Hair cells (cluster: 5)
 potential marker
 NA
PRJNA668529 (3d) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 days Neuronal precursor cells (cluster: 6)
 potential marker
 NA
PRJNA668529 (control) olfactory rosette baseline 3mpf, intranasal PBS
GSE122680 (24hpf) retina baseline 24hpf, WT, untreatment Retinal progenitors (cluster: 1)
 potential marker
 NA
GSE122680 (1.5dpf) retina baseline 1.5dpf, WT, untreatment Retinal progenitors (cluster: 1)
 potential marker
 NA
GSE122680 (3dpf) retina baseline 3dpf, WT, untreatment Retinal progenitors (cluster: 1)
 potential marker
 NA
GSE122680 (14dpf) retina baseline 14dpf, WT, untreatment Amacrine cells (cluster: 1)
Retinal progenitors (cluster: 3)
 potential marker
potential marker
 NA
NA
GSE122680 (2dpf) retina baseline 2dpf, WT, untreatment Retinal progenitors (cluster: 3)
Retinal progenitors (cluster: 4)
Retinal progenitors (cluster: 6)
Retinal progenitors (cluster: 3)
Retinal progenitors (cluster: 4)
Retinal progenitors (cluster: 6)
 potential marker
potential marker
potential marker
potential marker
potential marker
potential marker
 NA
NA
NA
NA
NA
NA
GSE131136 (all) trunk, skin baseline 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone Proliferating progenitors (cluster: 14)
 potential marker
 NA
PRJNA641144 (M_INV) tumor disease adult, ZMEL1-INV cells in vivo metastases Melanoma cells (cluster: 5)
 potential marker
 NA
PRJNA641144 (D_INV) tumor disease adult, ZMEL1-INV cells in vitro individual culture Melanoma cells (cluster: 3)
 potential marker
 NA
PRJNA641144 (D_PRO) tumor disease adult, ZMEL1-PRO cells in vitro individual culture Melanoma cells (cluster: 2)
 potential marker
 NA
PRJNA641144 (C_INV) tumor disease adult, ZMEL1-INV cells in vitro co-culture Melanoma cells (cluster: 3)
 potential marker
 NA
PRJNA641144 (C_PRO) tumor disease adult, ZMEL1-PRO cells in vitro co-culture Melanoma cells (cluster: 2)
Melanoma cells (cluster: 3)
 potential marker
potential marker
 NA
NA
GSE158099 (WT) whole body baseline 6dpf, cd41:GFPlow-WT Multipotent cells (cluster: 8)
 potential marker
 NA
GSE158099 (runx1 -|-) whole body hematopoietic 6dpf, cd41:GFPlow-runx1-/- Dividing HSPCs (cluster: 6)
 potential marker
 NA
GSE158099 (WT) whole body baseline 10dpf, cd41:GFPlow-WT Multipotent cells (cluster: 4)
HSPCs (cluster: 5)
 potential marker
potential marker
 NA
NA
GSE158099 (runx1 -|-) whole body hematopoietic 10dpf, cd41:GFPlow-runx1-/- Multipotent cells (cluster: 2)
 potential marker
 NA
GSE158099 (WT) whole body baseline 16dpf, cd41:GFPlow-WT Multipotent cells (cluster: 6)
 potential marker
 NA
GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/- HSPCs (cluster: 2)
 potential marker
 NA
GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/- HSPCs (cluster: 1)
 potential marker
 NA
PRJNA415636 (brain) brain baseline adult, Zebrabow M, brain
GSE151354 (wild type) cartilage baseline 21dpf, wild type
GSE144944 (fgfr3 -|-) cranial vault growth 1mpf, fgfr3 -/-
GSE144944 (fgfr3 +|+) cranial vault baseline 1mpf, fgfr3 +/+
GSE130526 (fin) dorsal and anal fin baseline adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
PRJNA706197 (18hpf) embryo baseline 18hpf, FACS sorted sox10:nEOS cells
PRJNA706197 (20hpf) embryo baseline 20hpf, FACS sorted sox10:nEOS cells
PRJNA734348 (shield, control) embryo baseline 6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
GSE173972 (HET, ezh1+|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos
GSE106587 (MZoep mutant) embryo baseline 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
PRJNA734348 (shield, dnmt1) embryo growth 6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA734348 (dome, control) embryo baseline 4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA706197 (24hpf) embryo baseline 24hpf, FACS sorted sox10:nEOS cells
PRJNA706197 (12hpf) embryo baseline 12hpf, FACS sorted sox10:nEOS cells
GSE126647 (Pbx4-depleted) embryo growth 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE173972 (KO, ezh1-|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos
GSE158849 (unlabeled) embryo baseline 6hpf, WT, 4sUTP injected (unlabeled)
PRJNA734348 (dome, dnmt1) embryo growth 4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA706197 (1.25dpf) embryo baseline 1.25dpf, FACS sorted sox10:nEOS cells
PRJNA706197 (14hpf) embryo baseline 14hpf, FACS sorted sox10:nEOS cells
GSE173972 (WT, ezh1+|+) embryo baseline 1.25dpf, Kdrl-positive embryos
PRJNA640816 (2dpf) embryo baseline 2dpf, FACS isolated -4.9sox10:EGFP+ cells
GSE158142 (2dpf) head baseline 2dpf, untreatment
GSE158142 (20hpf) head baseline 20hpf, 21-22 somites, untreatment
GSE158142 (12hpf) head baseline 12hpf, 6 somites, untreatment
GSE158142 (24hpf) head baseline 24hpf, untreatment
PRJNA608912 (wt_unjuried) heart baseline 5mpf, wild type, uninjured
PRJNA608912 (kit_14dpi) heart regeneration 5mpf, kit mutant, 14 days post injury
PRJNA608912 (kit_uninjuried) heart regeneration 5mpf, kit mutant, uninjured
PRJNA608912 (wt_2dpi) heart regeneration 5mpf, wild type, 2 days post injury
PRJNA608912 (kit_2dpi) heart regeneration 5mpf, kit mutant, 2 days post injury
PRJNA608912 (wt_7dpi) heart regeneration 5mpf, wild type, 7 days post injury
PRJNA608912 (wt_14dpi) heart regeneration 5mpf, wild type, 14 days post injury
PRJNA415636 (heart, blood) heart, blood baseline adult, Zebrabow M, heart and blood
PRJNA415636 (pancreas, liver) hepatopancreas baseline adult, Zebrabow M, pancreas and liver
PRJNA754013 (zebrafish) hypothalamus baseline adult, male, female, untreatment
GSE150498 (untreated ctrl) intestine baseline 6dpf, untreated ctrl
GSE150498 (DSS treated) intestine disease 6dpf, DSS treated
GSE137784 (no HCC) liver baseline 6mpf, male, isolated from the CreLox zebrafish with HCC
GSE137784 (HCC, HepABC) liver disease 6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
PRJNA605021 (supporting cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA605021 (hair cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
GSE123241 (fgf3 mutants) neuromast regeneration 5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
GSE123241 (fgf3 siblings) neuromast regeneration 5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory
PRJNA668529 (3h) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 hours
GSE148591 (6mpf) pituitary baseline 6mpf, male, Sox17:CreERT2
GSE148591 (3mpf) pituitary transplant 3mpf, graft transplantation during early embryogenesis
PRJNA415636 (primary pancreatic islet) primary pancreatic islet baseline adult, Zebrabow M, primary pancreatic islet
PRJNA672101 (nrl-KO) retina growth 5mpf, three retinas from nrl-KO zebrafsih
PRJNA672101 (WT) retina baseline 5mpf, three retinas from WT zebrafsih
PRJNA551501 (2mpf) thyroid gland baseline 2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf) thyroid gland baseline 8mpf, Tg(tg:mVenus-T2A-NTR)
GSE163907 (24hpf) trunk baseline 24hpf, trunk tg(sox10:GFP) positive cells
GSE152982 (wild type) trunk baseline 1.25dpf, untreatment
PRJNA641144 (P_PRO) tumor disease adult, ZMEL1-PRO cells in vivo primary tumors
GSE159709 (melanoma) tumor disease adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
PRJNA641144 (M_PRO) tumor disease adult, ZMEL1-PRO cells in vivo metastases
PRJNA641144 (P_INV) tumor disease adult, ZMEL1-INV cells in vivo primary tumors
GSE158099 (runx1 -|-) whole body hematopoietic 2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT) whole body baseline 2.5dpf, cd41:GFPlow-WT

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