RNA id: XM_007243193.3


Basic Information

Item Value
RNA id XM_007243193.3
length 4664
RNA type mRNA
GC content 0.39
exon number 8
gene id LOC103042672
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 7819031 ~ 7828733 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTGGCTACTGGCGGAAGTTATCACATTCACCTGTTGTACATTGAAACAGGAAAAGAGCGAATCGATACAGGCGGCGTTTTGGCGAAGCTAAAAGCGCGTTTTGTagtttttacttgtttaaatAGCTTTTATCGCTCTTATCGCTGCACCCATGGACAAGTTAAAGAAAGTTCTGAGCGGGCAGGACAACGGCACCGACGACCTGAACGTGCTGCAGGCGGCGAGTGACGCGACCACGCTGGGCTGGGGGACCCGAGTCAAAGCCTTCATCGCCTGCTTCGCCCTGGGAGTGCTCTGCTCAGTTCTGGGAACGTGTTTGCTATGGGTTCCTAAATCAGGTCTCATATTGTTCGCTGTGTTCTACACATTTGGAAACATTGCCTCGCTCTTAAGCACAATGTTCTTGATGGGCCCCTTGAAGCAAGTGAAGAGGATGTGTGACAAAACCAGAGCACTCGCAACAGCCATCATGATAACGTGTCTTGTGTTGACACTTTGCGCTGCATTTTGGTGGAAGAACAAAGGTCTTGCCCTGCTGTTCTGCATCCTACAATTTTTGGCCTTTACTTGGTATGGCTTATCATATATTCCATTTGCAAGGGACGCGTTGATTAAGGTGTTCTCCGTGTGTTTGAAGTGAGGGTGTAGTGCTACGGACCTCtcccgcccctctctctctctccatgccTGCTCTGGCTTCAGCTCCGCTACCCCCTGAGTGCCCACTGGTAGCGCCCACTCGAGCGCCCACTCTGCTGCCTggcacacacacgcatacacacactgcacaggtGTGCTTTTTCTCTTCCCGCTGGCTGGACACTCTCCAGGAATGTGTACAGAATGTAACCGCGTGCACCCACACTTATTCTGTCCCAGCAGTCAAAGAGCAATGGCTTTGTGAAGACACAGGTGACCACAGCCGTTGCTCTCATGAACAAAGTGGTCTtaaatctgtatattttatatatctgtgGCTATTGCTGTAAAATAGAAGTTCTAGAACTACACTGCACTACAGGCCAGAAGTTTGGAAGCAACAGGCCTAATTCCATCCTGGGAAACTGCTGTATAGACTATAAGACAACTTTGGGGCAGTTTTaaggtttagaaaataaagaatacatttttttaaagatgagtTATATGAAGAACGTTTTAAGAATAACTATTTATCTACTTTTATCTgaaggaacattttaaaatattttctttcaaaaGGTCCTTTGTGTAGCCCAGTCAAAACCACCGGTAGGACTGTCTGTAAAACACAATTTCACATCAGACAACTATGAATACCTTTATTTACCTTTACATAATTAAATTacgtagaataaaaaaaaaaaaaggattatatgttctgcttaaaaaaataattgattgcTTCCATACTTATGGCTAGTTACATATAATCATTCCAAAATCCCCTCCCTTCTCTTTGCTGCCTGCTTTTAGTAAAGATGTAAAGATAAGCCAGATGTAGGACTGAATTACTCTGTGAATATGGAATCGACCATTGAAAATCTTCAAAggatttgttttagtttttctttgttgttatttttttttgttactgaaTGTATTGTTCTTGTATTGATCCGTTTATGTAATTGACTTGTGACATAGTAGTTTGGGTCATTACTTTATTTTGCACTTTCCACAAGTTTAAAGGATCATTGCGATATTTGTGGTGTGGTTTAATAGTTTCTTAGCTTGTTGTTCAAGGCTTGCTGGTAGACTATTTAATTGccaatattctgtttattttttagttctGTTTCAGATTCTTCTATTTCAAATTAGAGTTACAGTGTGATTTAATTTATACTGAGGCTGCatgattttggaaaaaaagccaTTGCAATAGATTGTTTgtctgcaatatatattgttatattcaAAAATACTGGATTTAACACCATAttttaacagaagtcagtgatccaacatgtcatgatacAAATAGTGCACTCCCTATATTCAAAATtgaagtaaaatacattttccttTTATTCCAAATGGCATACTAaccttacattacattgcacATCCTGCGATGTAACTATTGCACATACCCACATTACAACAGCGATgctaaaacaatattttgtgcagccctaatttatGCTCACAACATTTGAACAACCCCAggccaacaaaaaaaatcttaaacacAATAACTACCactgtgttttcacacttgaaagtcatgtgtttgttacattcaATACATTTAGTCCAGTTAGTTTTTATTATCACTCTGCAGTTTACTGACTGAATGTACTAAGAAATGTTACTACTACATCATCATCTATGAGggcaaaatgtaaaataaaatgtaaagtcaTGGCATTTCATTCTAAGGTTTCACAAAAGGCTTGTGAAATCAAATCTCGACATTTTTCACCCCAAACTACATTAGATAACTACCATTTAAACATCCAGTAtcaacttaaaatattttaaattcattCTTTGGCACCTCTAAGGTCCTTAATTTCCGAATTTGTGTCTTTAAAGTTTTGAAAACACTTgatattcttttatatttcaTGGAAAACAGGGTTCATGTCTATACTGTGCTGTAGTTCTCATTACTGAAGTAGCTAATAGTGCTCtggtttgaagtgtgttgtgtggttgcacataaaataaatcagCACAGTATTTGCCAAAGCCTGAGGAGAGGCTCTTTGCTGTAAGGTTTTGTGTGGTACcaattaacatgttttttttttctttattagttGAAGGTCTAGATAAACTGCTGTTGTTACCAagtgttgtaatttttttttcttttactaaaagaaatagTTGATTTGCTCCAGGTATTTCAGTTGCCTCAGTTTGTGTCttggcattttattattaaacttgCTAATATATCATttagtgtatgtttttttttgtgtgagcaCAATAACATGGGCAACCTCAGCTAACCTGTTACAAGTGAAACAAGTGTGAGCTGAATGTAAAACTTACCCCACCACCCCACAGAGATTTATTTGTTTCAGACTGAGGGCTTGTTTAAAAGTCTGGTACATCAGAACAAACACAGTGCATTTAGTAGAAGTCTATGAACAAGGCTTTTCAACAtaattgcattaaaaatgtCTGCATCAAAATACCACAATAAATATGATTAGTGAAAAAGGTTGTGTTCTCCATGTGGCCTGTCTCAACTCTGagctttttattatgtttttcctttatgcAAGATGACGAAATACAAAACGGAAACTTTCTGCTGGGAAAGTGAGTTAAGTTCACTGTTAAGGTACACAGTTAAAATGAAACTTTGACTAAACTGAAGTGAATGTAATCTGTAATCTTTGTTAAGTCCAGGTTTTATTTTGCTGCATTTCTACCATCTCTTGGGAATGGAATTCACTAGAGCTCCAAAGGTTCCTACGGAAATCCTCTTCCACTCCTCCATTATGACATATGACAGAGCTGGTGGATGTCAGATACCTTTTCCTCCACCTTccgcttgaggatgccccacagatgctcaattaGGGTCTGGAAACATACTTGACCAGTCCATCACCTTTAACTCTTGAAAATTGCTTTTTCAGTTGTTGCATGTGTGTTTTGAATTCGTTATAATGTTGGAAAACTTTCAAAAAGGAggggatcatgctctgcttcagaATGTCTCAGTACATGTTGGCATTCATGTATCTGCCAGTGCCAGAAACACTCGTGCAAGACCAGATTATGCTACTACCACCACCTTGCTTCACTGTAAGCAAGACACAGTTATCTTGGTTCTCCTCACCAGGGCATCACCTCACATGCTAGACATATTTGTCTCATCAGACCAAAGGACATGGTACCTTGGAATCCTTGCTATTGGAATGCTTGTCTTCAACAAACTGTTAAAGGGCTTCTGTGTGCAGCAACCTCAGTACAGGCTTCTTTCTGGGATGACAGCCATGCAGACCAAGTTAATGCTGTATGCGTTTGTGTAGTCTAAGACTTTCCACTTTTTCACTCCTCTGGATATGACGCTGAACATGTGGACATAACTTCTTTGGTCGGCCCTGACGAGGCCTGTTCCGAGTGGAACCTATCCTGAAAAACTGCTGTATGACATGCTGTAGCTCAGTTTCAGGGTTTTGGCAAACTTCTTGTCAGTTCTGATGCTGTCTGCCTGCCACAGACTCTAGTATTCACTCGAAAGACTCTATTTCCCAGAATACACCTGCGCCCAACCTCCCAGACATGCTGAATCAGTGAGGCTTCAGCTTTACAGCTCACCCAGTTACTGACATTGCAGGACCTGTGTTCTCCCGTATAAATACCGTGTTTTCCTTTTCTCCCTTGCTCGGTATTGAACctagttttctagctcttctacccagcatttcttttgtgtttgtctttttGTAATCGACCCGTTTTGTATATTTTACCTCTCCTTTGCCTGGCTCTGTATAGTTTGATTTTATTCTCATTGCTGACctgcttttgtattttgacTACCCTATTTGCTTTGCCCTCTAAACATTTTGGATTACCTGTGTATGACCATATTGCCTGCTCACTCTAATATGTTGTTTACCTTTGCCCTACTGTTACTGCccttgcctgtccctgaccatttctgtatgtttagccttttatttaataaactgtgtgctTTGTATGCTCA

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119557 lncRNA upstream 78097 7739421 ~ 7740934 (+) True G88886
TU119536 lncRNA upstream 104840 7669255 ~ 7714191 (+) True G88867
TU119467 lncRNA upstream 341781 7426023 ~ 7477250 (+) True G88801
TU119464 lncRNA upstream 423221 7352453 ~ 7395810 (+) True G88799
TU119457 lncRNA upstream 481339 7336781 ~ 7337692 (+) True G88798
TU119583 lncRNA downstream 26136 7854869 ~ 7855150 (+) True G88906
TU119585 lncRNA downstream 28648 7857381 ~ 7857621 (+) True G88908
TU119595 lncRNA downstream 41043 7869776 ~ 7871020 (+) True G88917
TU119598 lncRNA downstream 44344 7873077 ~ 7873431 (+) True G88919
TU119679 lncRNA downstream 246748 8075481 ~ 8075694 (+) True G88976
XM_022673447.1 mRNA upstream 1462 7809016 ~ 7817569 (+) True LOC111193321
XM_007248885.2 mRNA upstream 15216 7797333 ~ 7803815 (+) True LOC103027817
XM_007248886.3 mRNA upstream 22549 7786322 ~ 7796482 (+) True rgn
XM_022673348.1 mRNA upstream 33850 7763877 ~ 7785181 (+) True vps16
XM_022673443.1 mRNA upstream 83245 7728539 ~ 7735786 (+) True LOC111193320
XM_022673449.1 mRNA downstream 3639 7832372 ~ 7852994 (+) True LOC103033509
XM_022673454.1 mRNA downstream 67557 7896290 ~ 8069115 (+) True LOC103032863
XM_022673455.1 mRNA downstream 248364 8077097 ~ 8080028 (+) True LOC111193322
XM_007248876.3 mRNA downstream 389388 8218121 ~ 8222533 (+) True LOC103024957
XM_022673349.1 mRNA downstream 413586 8242319 ~ 8249434 (+) True sumo1
TU119517 other upstream 239071 7578610 ~ 7579960 (+) True G88849
trnap-agg_3 other upstream 576054 7242906 ~ 7242977 (+) True trnap-agg_3
TU119113 other upstream 2695305 4911656 ~ 5123726 (+) False pard3
TU119068 other upstream 3012358 4796822 ~ 4806673 (+) True G88486
TU119049 other upstream 3138194 4680113 ~ 4680837 (+) True G88473
TU119784 other downstream 417481 8246214 ~ 8249434 (+) False sumo1
TU120304 other downstream 1774038 9602771 ~ 9610254 (+) True G89453
TU120818 other downstream 2856924 10685657 ~ 10686056 (+) True G89805
TU120819 other downstream 2859533 10688266 ~ 10688820 (+) True G89806
TU120940 other downstream 3075911 10904644 ~ 10907172 (+) False LOC111193328

Expression Profile