RNA id: CI01000003_00719773_00720087.mRNA


Basic Information

Item Value
RNA id CI01000003_00719773_00720087.mRNA
length 750
RNA type mRNA
GC content 0.44
exon number 1
gene id CI01000003_00719773_00720087
representative True

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 719583 ~ 720332 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGATTGTCTGTTTAAAATCTATTACTCCCCACGCCTGTAGAGGGCACTGTGACGTGTAAACCCTTACTGCACCACATCGCGTTGATAAGACCTGCTCGATACAGTGCAGAGTAGTCGATTGGGGACCTTTGAAGGTAAGTTACTGTTTACATAACGAAATATCAGTTGAACTATACATATATATTTAATATGAACGTGGTTAAGATCATTAAAATCTAATATAGATATTTGTAACAGGTTCAAAATGGTGCTGCGGCGGATCTTTCATGCCTTGATAAACAACGCTCAAGTGGTGGAGAAGCTCGCGGAGTCGCGACCCATCAGACGGGCGGCGCAAATCACAGCCTTCGCCATCACTAAAGCACAGATAGCCGGGAAAGACGCCTCGACCAAGCTGCTCAGATCCGACACTTTTCGCCAGATACGCGAGGAGACGTCAAAGATGCCTAGGGATGTGCAAGAATTGGGTCGGAGAGCTACAAGACTGCGGGATACGTTTGTGAAGGAGGTGAAAGAGGGAATGAGGGACGCCAACCGACAGATAAAAGACAGAAAGTGACGACTGAAGCGTTGAATGAGTGAACAGATACCTCATATTCATGGCGCTATTGTTATGCCACTTGTGAATACTAGGACAGCGTCATTAAAGACTCAGAATATTCTACTGTCAGAGACTTCATAGACTTATTTAAATACCACTGTAAAGATGGCTTGTATGACCGGAAGTGCCATGTTGTTTGAGAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25752 lncRNA downstream 1491 716445 ~ 718092 (-) True G22821
TU25802 lncRNA downstream 75523 641943 ~ 644060 (-) True CI01000003_00640353_00641395
TU25608 lncRNA downstream 145655 570454 ~ 573928 (-) False G22698
TU25611 lncRNA downstream 145655 570550 ~ 573928 (-) False G22698
TU25612 lncRNA downstream 145655 570550 ~ 573928 (-) True G22698
TU25754 lncRNA upstream 21970 742302 ~ 744603 (-) False G22822
TU25755 lncRNA upstream 21970 742302 ~ 744603 (-) True G22822
TU25921 lncRNA upstream 138095 858427 ~ 860858 (-) True G22973
TU25942 lncRNA upstream 162875 883207 ~ 883409 (-) True G22983
TU25943 lncRNA upstream 170838 891170 ~ 891619 (-) True G22984
CI01000003_00640353_00641395.mRNA mRNA downstream 76107 639942 ~ 643476 (-) False CI01000003_00640353_00641395
CI01000003_00473640_00508021.mRNA mRNA downstream 211562 473576 ~ 508021 (-) True CI01000003_00473640_00508021
CI01000003_00458786_00461307.mRNA mRNA downstream 258276 458468 ~ 461307 (-) True CI01000003_00458786_00461307
CI01000003_00418856_00424844.mRNA mRNA downstream 293614 418477 ~ 425969 (-) True CI01000003_00418856_00424844
CI01000003_00410927_00411601.mRNA mRNA downstream 307075 410569 ~ 412508 (-) True CI01000003_00410927_00411601
CI01000003_00806620_00830978.mRNA mRNA upstream 86019 806351 ~ 831623 (-) True CI01000003_00806620_00830978
CI01000003_01194276_01196374.mRNA mRNA upstream 472984 1193316 ~ 1197019 (-) True CI01000003_01194276_01196374
CI01000003_01200556_01220189.mRNA mRNA upstream 479720 1200052 ~ 1220189 (-) True CI01000003_01200556_01220189
CI01000003_01348419_01352984.mRNA mRNA upstream 626267 1346599 ~ 1352984 (-) True CI01000003_01348419_01352984
CI01000003_01368353_01374263.mRNA mRNA upstream 648021 1368353 ~ 1374263 (-) True CI01000003_01368353_01374263
TU25632 other downstream 649839 50512 ~ 69744 (-) True G22716

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU14373 True 879 TUCP 0.36 2 NC_056700.1 5608327 ~ 5609276 (+)