RNA id: CI01180000_01492241_01493781.mRNA



Basic Information


Item Value
RNA id CI01180000_01492241_01493781.mRNA
length 1475
RNA type mRNA
GC content 0.39
exon number 2
gene id CI01180000_01492241_01493781
representative True

Chromosome Information


Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 1491671 ~ 1494446 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACTATAAAAAGAACTTAATCAATATGTAAAAGAACAGCATCAGTACACATTATAAGGGCCCCAATGATAGCATTTCGCCATATTGCTGTATAATTTCTGTAAAATTCAGTTTAAAACAGTTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTCGACTCCGGTTTGAACAATGTAAGGCTGAACACCGTTACTGACAATCCTCATTTTGGCTGCATGAGATTCTCCAGCTTTGTTTGTTGAGCAACCGAAGCGTGAGCTGTTAAAGTTCCGCCCTCTTCTGGAAAGGGGTCTGGGAGCAGCAGCTCATTTGCATTTAAAGGGACACACACAAAAACTGCATGTTTTTGCTCACACCCAAATAGGGGCAAATTTGACAAGCTATAATAAATGATCTGTGGGGTATTTTGAGCTGAAACTTCACAGACACATTCTGAGGACACCAGAGACTTATATTACATCTTGTGAAAGGGGCATTATAGGTCCCCTTTAATGAGATTCACCCACTTAAATGTGAGTTAATGACCTACTGGCAGACTTTCTCAATCCCAATTCTTCATTTGCATATTCAAAATGGCATTAGATGAGAACAAATCTTTGACATTATGGCCCAACAGCTGTGAAGGTTCCCAGCTAGATGGTCACAAACTCTCTCAGTCTCCAATAGAAACAGTGGCGCTGCCAAAGAGTGAAGTACCCAGCCTGCTCTGCTCCGCTGCCCCATCCTGTGGCTCTCAGCCTGACGGGGCATCAGCAGACACGGCACAGATGTTCATTAACATCACACAAACAGCCCTGACAATCTGCTCTTAGATGACTGCCATCAGTCCTCACGCGGTCCAGAGAAACAGAGAAACAACAGTCAGCGGCAACGTGCAGCTCTACGGACGCCGTCACTCTCCAATGAAGCAAGAGATACTGACAGAAAACAACAACAAAACACTTTGAGAACAGGAATTCCTCCTACATTTAAAGATGAAGTGTGTCATTTCCATACTGTGCACAGAATGTGAATTATCTATATGCATGAAATACCCAGATGACCTTCTAACAAGTGCGAAAATGTGCAATCTGAGCACACTGTGCGTAATAGTGCATCCCACAATCCAATGTGTTCAACATGACTTTTTTCATTTTTAAACAATGAAGCTACTTTAATGATACTTGGTTATGTTTATCCTTGCATAATGCATACTACATATGAAGCAAACTAGTACTATTACTATAGCACTAAAAGTACATTAATATTTCATTTCAAACTGTAAAAAAAAATGTTTTGCAAATAAAACAAAGATTATTAGAGCATGTTTTACATGCTTTTCAGTCTTTCTACTTTAAAATTTCAAGTTAAATTCAATTTTATTTTGAGTTTCTTTGAAATGTTTGTGAAATTTACTAGCGATTTCTGAATGAAAATTGTTTCTGCACTCAATTTTTTGCAGTGTTCCGTTTATAAATGGTACAGTTGTCTCAGCAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU799547 lncRNA upstream 58808 1431965 ~ 1432863 (+) True G678869
TU799607 lncRNA upstream 59930 1431505 ~ 1431741 (+) True G678929
TU799546 lncRNA upstream 60704 1429873 ~ 1430967 (+) True G678868
TU799606 lncRNA upstream 63332 1428052 ~ 1428339 (+) True G678928
TU799569 lncRNA upstream 134079 1349918 ~ 1357592 (+) True G678891
TU799629 lncRNA downstream 23907 1518353 ~ 1612547 (+) False G678946
TU799634 lncRNA downstream 96726 1591172 ~ 1593047 (+) True G678948
TU799627 lncRNA downstream 212069 1706515 ~ 1707619 (+) True G678945
TU799620 lncRNA downstream 232715 1727161 ~ 1733717 (+) True G678942
TU799752 lncRNA downstream 240971 1735417 ~ 1735761 (+) True G679064
CI01180000_01380859_01385445.mRNA mRNA upstream 105888 1380701 ~ 1385783 (+) True CI01180000_01380859_01385445
CI01180000_01372608_01374455.mRNA mRNA upstream 117124 1370761 ~ 1374547 (+) True CI01180000_01372608_01374455
CI01180000_01196818_01224406.mRNA mRNA upstream 266756 1196786 ~ 1224915 (+) True CI01180000_01196818_01224406
CI01180000_00955725_01050852.mRNA mRNA upstream 439845 954922 ~ 1051826 (+) True CI01180000_00955725_01050852
CI01180000_00947514_00949868.mRNA mRNA upstream 540765 946421 ~ 950906 (+) True CI01180000_00947514_00949868
CI01180000_01542059_01545609.mRNA mRNA downstream 47613 1542059 ~ 1546080 (+) True CI01180000_01542059_01545609
CI01180000_01576739_01578505.mRNA mRNA downstream 82293 1576739 ~ 1579406 (+) True CI01180000_01576739_01578505
CI01180000_01747067_01755038.mRNA mRNA downstream 252621 1747067 ~ 1755257 (+) True CI01180000_01747067_01755038
CI01180000_01828938_01830221.mRNA mRNA downstream 334492 1828938 ~ 1830814 (+) True CI01180000_01828938_01830221
CI01180000_01832263_01834405.mRNA mRNA downstream 337567 1832013 ~ 1834999 (+) True CI01180000_01832263_01834405
TU799296 other upstream 335999 1149551 ~ 1155672 (+) True G678637
TU799410 other upstream 425580 1059843 ~ 1066091 (+) True G678751
TU799069 other upstream 1340019 147934 ~ 151652 (+) True G678440
TU799630 other downstream 23907 1518353 ~ 1556151 (+) True G678946
TU799769 other downstream 300724 1795170 ~ 1799433 (+) True G679076
TU800043 other downstream 894421 2388867 ~ 2397360 (+) True G679324
TU801024 other downstream 1195316 2693355 ~ 2694234 (+) True G680192
TU801022 other downstream 1199961 2694407 ~ 2695436 (+) True G680192

Expression Profile