RNA id: XR_005040533.1


Basic Information

Item Value
RNA id XR_005040533.1
length 8271
RNA type mRNA
GC content 0.52
exon number 17
gene id zmp:0000001168
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 30175504 ~ 30222113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggtgtgtgtgaggggaggagaaggagggggttgGCTTTAGTGTGATTTGAATGGgcgtgagagagagcgtgagggaCTGAGCAAATCAACCTGCCTCTTTTGACTGAACAACGGGATGGAAGAGCTGAGCTCCTAGCCACACTGATCAGAGAGGAGTTTTATTTTTGGAGAGGGGAAGAAGGGAGCAGACAAGGGGAACcgaagagggagaagaaggagaaaagGCATCAGAGTCGGGATAGATAGCAGAAAAATGCTGtcatggggagagggggagggagcagaCAGAAAGGAacagaatgagaccaggcagggtGGAGCGGAGCTGAAATGTGGAGGTGTCCAGTGGAAGAGACCAAAGAGAAGCAAGCATGTGCTGAGGGGTGGGAGCTGATGGATGACAGATCAGAGAGGCCGACACACACGCAAATCCTCCCCAACCCAGAGGACAGAGAGCTGGACCACACCACGACTGGACCACACCACGACTGGACCACACCACGACTGGACCACACCACAACTGGACCAAACCACGACTGGATCCCACCACGACTGGATCCCACCACGACTGGACCACACCACAACTGGACCACACCACAACTGGACCACACCACAACTGGACCCCACCACGACTGGACCAAACCACGACTGGACCACACAACGACTGGACCACACCACGACTGGACCACATCACGACTGGACCCCACCACAACTGGACCCCACCACAACTGGACCACACCACAACTGGACCCCACCACGACTGGACCACACCACGACTGGACCCCACCACGACTGGACCACACCACAACTGAGGCACACTAGAATAGTAGTCATCTGCAAAGCCAAAGCTGGAGGACGTCCTAAAGGAACTTGGAATGGGTGTACGTTTTCCAGACCTAAAACATATTATTGTATCTGATACAGTCATCTAATAGTCCTTTGCATGTTGTTATTGAATGTGGATGAAGACCACGTGTAGTCCTCTTACTCATCAGGCTTGACACAGTGAGGAGAGATAGTTGGAGTCGGAGTCTGAGGCACCATGCAGTCTGACGACCTCTTCCTACGCAAGTTTTGCCGGCAGAGGCCACGACCCCCTCTGACAACGGTCAACTTTGACTCTAAGCGGGAGGGTGGGGTAAGGGCGCGGGTGGTGGCAGGGGAGTGGCCCCCGAGGAGGGATGGAACAGATGGGGAGAGTCTTACTACTCCGAGCTGTGTGGGTCTGAACCTGAGGTCAGTGGGCCGAGGACACATCATGCAGAGAAGCAACAGTGACGTGACGCTGGGAGACCTGGACTCCTCTGGTAAGGCGGGAGGGAAGGCAACACGGGCGGTGGGGGAGAAGGCAGGTGCCGGGGCCCAGGAGGACTCAGGGGTGGTGCTGCACAGGGAGTATGGCAGCCTCTCCTCACTGGAGAGACAGATAGGTCTGTCAGGAACCCAGGAGCCGAGTGCAGAGGACCATGGTGTTCTGAGCCCCAACGCCCTCCGCTTCAAAGACCCCTTTCTGCTGCTGGGCCTGCAGGGAACCCCTCCAGAGCCTGACGGCTTCTTCAGGGCTCTGTCCACCCCCGCAGGAGACACCCCAAAACCAGCCAAGCCCCCAAAGCCTGAGGGGCTGAGCAAGAAGGCCAAGCCCTCTCCTCCACAGATCCCCCAACCAGGTCCTTATGACAACCTGGGTGGAGGAGCCTGGGTCAGGAATGTTGCCCACTATGATGTCCAGAGCATTTTGTTTGACCTCACAGAGGTGGCTAGCAACCGAGACAGCATCGGCCGCAAAAAGAACATCACCTCAGGGGCATCGGCTGCCTCGACGATGCGTCCCCTCACCCAGGCCACGCCCTCGCAGAGCGGGGGCGGTGTTGGGGGGGCTGTGGAGGACCCCTCCCTGGACGAAGGAGATGGCATTGACAACGAGCTGCTGCTCAGCTGCCCCCACTTCCGTAATGAGATGGGGGGTGAGGAGCGGGCGGGCCTGGGGCATACGCAGGGCAGAGGGGGTCTGTGGCTAAGCCTGAGGAACCCCAACGATGCTGTCTCAGTACTGGAGGAACCCAGAGAGAGCCACGTCCAACAGCAGGGCAAGAGCAACTACTTCATAGAACACGCAGACCTGGGAGCCCACTACTACCGCAAATACTTCTACATGAAAGATCATCAGAACTTCTTTGGCATGGATGACCGCCTTGGTCCAGTGGCCATCAGCTTCcgtagagaggagaaggaggggtctAGTGGAGCTCAGTATAACTACAGGATCATCTTCAGAACCACTGAGCTGAAGACTCTGCGAGGCTCCATCCTGGAGGAGTCCGTGCCCTCAGCGGCCCGCCACACCACCCCCCGAGGCCTGTCTCCCAAGAGGCTCCTGGAGTTCATCATCCCAGAGCTCAACCTCCACTGCCTGCGCCTGGCCTCCACCTCACCCAAGGTCCGAGACACCCTGCTCAAGCTGGACGAACAAGGGCTGAACTTCCAGAGGAAGGTGGGGGTGATGTACTGCCGTGCAGGCCAGAGCTCTGAGGAGGACATGTATAACAACGAGAGCTCGGGGCCGGCCTTCGAGGAGTTCCTGGATCTGCTGGGGGAGCGAGTGAATCTGAAAGGCTGGGAGAAGTACCGAGCTCAGTTGGACACCAAGAcggACTCCACAGGGACCCAgtccctctacacacactaccaggACTATGAGGTGATGTTCCATGTGTCCACCATGCTGCCctacacagccaacaacacacaACAGTTGCTGAGAAAGAGGCACATTGGGAATGACATAGTGACCATAGTGTTCCAGGAGCCAGGGGCTCTGCCCTTCACTCCTAAGGCCATCCGCTCCCATTTCCAACATGTCTTCATCATCGTCCAGGTGGAACAGTCCTGCTCTGACCATACCTACTACAAgGTGGCGGTGACACGCTCCAAAGACATCCCGTTATTTGGGCCTCTGTTCCCTAAGGGTGCTCGATTCCCCCGTTCCCCTGCCTTCAGAGACTTCCTGCTGGCCAAGGCGGTGAACGCTGAGAACGCTGCCGAGAAGGCGGAGAAGTTCCGCTCCATGGCCACCCGGACACGACAGGAGTACCTGAAGGACCTGGCAGAGAACTACGTGACCACCACGCCAATCGACTCCTCCACCAAGTTCCCCCTGCTGTCCCTGGGGAGCAAACGCAAAGACAAACTGAAGGGGGCCAAGGGGGCAGAGCTGCACAGTGCTGGGGCATTGGTCTGGGCTGTGATGGCCACCAGTGGGAatgagggggagacaggaggacacAAGCTGCCCTGTCTACTGGGGGTGTCAGCTGAATCAGTGGTGCTGATCGAGAGATACACACGGAGGGTGGTGTTCAACTGCTGCTGCCGCGATGTGATTGGCTGGAAGGCGGTGATAGACAGCAGGGCCATAGGCGGGCCTTGCCTGGATATCTTCTATGAGAGGGGGGAGGCTGTGTCAATCAGTGTGATGGACAGTCAGGCGGAGGAGATACGGGAGATGGTGCAGAGACTGGAGTTGGTGACGCGGGGGTGCGAGGCACGGGAGGTGACGCCCCTGCGTGACGGGGTCGGCCAGCCAGGCTTCCTGATGAGCGAGGAGGGCTTTGTGACGGATCTGCAGCGGTTCGGCTATGCGGAGAGCGGGGGTCTGCAGCTGGGGGCACGGGTGGTGCGTCTGTGTGGCTACGCCCTGGTGCACCTAGGACCAGAGGAAAGAACCAGACTGCTCCGCACCGCCCACAAGATCCACATCACCGTCATCCCTCCAGATGAGAACGGCAAGCCCCGCAGGAGTTTCTCAGAGTTATACCAGAAAGCCATCCAGGATGCAGAGCGTAAGCCTGGGGAGGGCCAGTCTGGAGAGGCCTGGGTGCTggacgagagggaggaggaggaagagatggaggaagaggagcgggaacagggagaggggaaggaggcgGAGACGATGGAgggaccagcagagggaggagaggctgAGGACAGGCTGTCAGAGACTGGACAGGGTGAGAAGGACCAGGGGGACCagggctccctcctctccccacccagCCTGCCTCTGTTACGGGCCACCTCCCTGCAGGACCACCCACTCAACCAGACCGTGGAGATCACCCCCTCCCAGCTAACACGCAGCTACTCCCTAGAGAGGCACCCGTCCTGCCGAGACATATGTGACAGGCATGTGTATGACAACGTGGGTGTGAAGTTGAAACATCACATCTATGAGAACCCAGGGGAGCTGAGAGACGCCACGCCTGACCTCATCCTGGCTGTCAAACCCAAGATGCCCCTGGACGAGGAGCagtTTGTGGGGGCTGAGTTGGGTGAGGAGAGGCCATCAGCGAGTGACCCTTCCCTGTCCTCCACCCGGTTGTCATGtctgaacagagcagagagaaacTCCCGAGCCCTGAGCCTACACAACTCCATCACCAAGATCCTGTCGGAGACCACAGATTCCTCAGAGGAGGAGTGGCAGTCTATAGCTGATCTAGCCACAGCATGCCGCAGCATCCTAGAAGCCTTGTCACGTGAAGCAGGAGATGGGACCCAAGGAGCAGACTCCCTGACAGATGGCAAGCTAAAGGACATGAAGGACAGTGACTCACCCGGCCACCTGGAGGAGAAGGTGTCCCAGCTGGAGGACATGCTGAAGAGGCTGCAGGACGACTTGCAAAAGGAGAAGGAGGACAAGGCGGTGCTGCAGGCCGAGGTGCAGAGCCTCAGGCAGAATAACCAGCGGCTGCAGGAGGAATCCCAGAGCACCGTGGCCCGCCTCATCAAAGTCACCGAGCTGCTGTGCAATGTCAACAAGCCCTGCTAGCTCTGTCACAGTACACACTatgtgtacacagacacacaaacacacacacaaacaaacgcacacaaacaaacacacacacaaacaaacgcaGACAATCAAGATCATAAACACATTCCGGACACACCACATTCAATATTGTATACAAACACCCATGCACAATACATCAACATACTCTATTACTGTTGCTCACTGTATattaatacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatgcataataCTCTGCATTCTGTAGAATGATATTTGAACTCTGGACCAGCCCATGAGTGTCAAACCAACTGAAAAACAACCCTGAGTCATTTCTCACCATCTGGTCTTCTCAATAGCTTGACCAGTTAAGAGGCATATCCAGGGTTGCTCTTTACCCAATAGTGTGTTTCTTTGTACCGTgagtgtgcgcgtgcgtgcatcACCATGGTTATTTTATCTTGCTTCACATACTTGACAAGTTGGGCAGAATAGCAATTGCGTAAAGCTACACAAATGATTTAGATGAAGAGACATGTGCAGCATGTTTGATGGCTGTTTATTTCAATTGACCCaaagtgtgtgtacagtatgtaaacagtagtctctctcctctctgctcaaCCCTCTCCATGATATGCAACGTCTCGGACTGAGAACAAACAGCTCAGCTGTGCACCATTAGAGGGGATGGCCTTGGAGCTACATAGGGAAAATGACATGCATGCAGGCAGCCTGCTTGAAAAGACGGACTGATGCATACTgaccctgcctctctctgccaaCCTGCTCACAGAATGGTCCACTGCTGATGACGCCAATAACAATATGAGATCAGAGGAGGACGGGATTATTCCTCCTCCAAGACTATTCTGCCAAAAGACGCCAGGGCAGATCTCCTACACCCCACTCAGACCACTGGACCCAGCTGTGACACGCCCAAAATAACTAGACTTAAAATTTGGAAGGGATGCCAAACAATCGTCAATCACACTGTCTCAATGCTACTTTTTAAAGACCTACCCTTTTACTTCCTCTTGTGATTTTATTTTAGAGTCACTGTGATTGCCCGGTACCAGCAGATTACCATATATTCTAATGAAATAAAACATCTAAACTTTATCTATATGTGAAGATGACATGTACAGCTGAAGTGTTCAATGTTACTTAGCGCATTCGGTTGTGTATGCTGTCCATTGCAGGATGGTTTAACATGCAGACCAGTGTAAATGTGGCCGAACAGGCTGTTTGATCCATGCTGTTTGAAATGTTGGAAATGCCTTGTTGGAAATGATTAGTAGAGTTGAGAAGTGGAAGAATATCTGATGTTTTACTGTGTTCTTCTGTATAGTTCTTTAGATTCTAGGAGGTTGTTGAGGCATGATACTGCACCAGGCAACTTCCTAGCTcccctctgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtatgtatgtatgtatgtatgtatgtataaaaatgtaataACTTATTAATCTTGCAAATGTGGAATCCTTGTTGGCTGTTTTAATACAAGGGGGGGGGGAGCAATTACATGTGCTAAAAAGTTAAACTGGTATGGTGGGGGTTGGTTTTCAGGAATAATCTTTTTTTTGGTAGAAATTCAAACATAAGAAGACAGCAGGAAAATATATTTCTGCAATGTTCTAGTATTGGTTATCATTATCATATTACTATTGAGCTATTCATTCAGAGCTCCTACGTTCACATTCAATAAGGTCTCTAAAGCCACTAGGTGCGTGTTAAAGAGTGACTCTCAGACTGTCCACAGAGGACCGGACAGACAACATGGTCAGACTGGTTCATGTGAAGGCTTCTCTCTCAGACATTCTGCCTACCTGAAAGTGTAATGAACGGTAACTCAGCTTGGTGTCTTCATTTCAGTTCTTTATGGTAGCAGACAGTGACAGGTTGTCCTGTACCCTCCagaatagacaggtgtgtctgcCACATGACAGACGCAGATGTACGGTTGGTTGGTATGGGGTCTCTCCAGGGTCCGCTCTGCAGCCCTAATTAAATCTAAAAGAAGACCTACAATAAGATGGGTTTAGGGACCCCAGGAAATTGTCAAATGGGTTATATGAAGATGATATGAAGTTTGTGTTTTGTTAGGTTAATGGGAATTATTCTGTATAGCACTGGTTAAAGACCAGTATCTCCAACCCTATCAAAATATAATCATTTGATGCAGAAAAACGCAACTTTCCACAATCATTTGGACAAGTATAAACCATCCTCCAAATCACACTCTTGAGTGCACTTTGAAGACCCATTTATGCATCACAGAACATATGTCTGACACCTAACACAGAACGTATGTCTGACACCTAACACAGAACGTATGTCTGACACCTAACACAGAACGTATGTCTGACACCTAACACAGAAAGTATGTCTGACACCTAACACAGAACGTATGTCTGACACCTAACACAGAACGTATGTCTGACACCTAACACAGAAAGTATGTCTGACACCTAACACAGAACGTATGTCTGACACCTAACACAGAACGTATGTCTGACACCTAACACAGAACGTATGTCTGACACCTAACACAGAACGTATGTCTGACACCTAACACAGAAAGTATGTCTGACACCTAACACAGAACGTATGTCTGACACCTAACACAGAACGTATGTCTGACACCTAACACAGAACGTATGTCTGACACCTAACACAGAAAGTATGTCTGACACCTAACAACACATTACAGATAGGAACAATTCAATAGGCTCTCACCTGCTGTAGGCTACTTCAGCTGGCAAATGATCTCCAACAAGCCAATAGGAAACCTGTGAGAAAGATCCCTGCTAGAGACATGTGGctgttccctcctcccctccatgcTGTAAGAGCACAGATAAATGAACAGTGTTTTCCTCTTATTGGTTTGCCTTTTATGTCATGGCACCATCCTTACAGGAAACCATGGCATCAGTATATGCCCTACTTACCACACAGAGCTGGAATGTCAAGATAGAATACAGGACATGATTACCAGTAGAACTACACATGAAGTCATATCCTGGTGTAGGTTTACGGCAGGCCTGGGCCACACATCAGGTCAGAACGGTAGCACACATTATGCACTCAGCTCAGCCAGTTAAAGAGCTGACGTTACCATAACCAGGCAGTGGCACACTGAGGGAATGTATTGTAAaacacaaaaacatgttttcggtATGATGCCACCTCTAAACCTGTTCTTTCCCTCACAGGAAGTCAACTGACTAAATGTTGTTCATGTACTGTGAACTGGAGGACATGGCAATAAAGAATCCTTTAGAAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2484309 lncRNA upstream 46724 30128488 ~ 30128781 (+) True G2173674
TU2484332 lncRNA upstream 55150 30120018 ~ 30120355 (+) True G2173685
TU2484312 lncRNA upstream 56950 30118046 ~ 30118555 (+) True G2173677
TU2484330 lncRNA upstream 59521 30115731 ~ 30115984 (+) True G2173683
TU2484266 lncRNA upstream 68002 30105248 ~ 30107503 (+) True LOC110510000
TU2484384 lncRNA downstream 56506 30278618 ~ 30279075 (+) False G2173737
TU2484385 lncRNA downstream 56506 30278618 ~ 30279652 (+) True G2173737
TU2484387 lncRNA downstream 59894 30282006 ~ 30284686 (+) False G2173738
TU2484386 lncRNA downstream 61618 30283730 ~ 30284686 (+) True G2173738
TU2484401 lncRNA downstream 77501 30299613 ~ 30309735 (+) False G2173744
XM_021591263.2 mRNA upstream 28180 30139343 ~ 30147325 (+) True LOC110510004
XM_021591261.2 mRNA upstream 39565 30129518 ~ 30135940 (+) True LOC110510002
XM_021591264.2 mRNA upstream 47978 30120517 ~ 30127527 (+) True LOC110510005
XM_021591260.2 mRNA upstream 68004 30050188 ~ 30107501 (+) False LOC110510000
XM_036967378.1 mRNA upstream 168044 29978474 ~ 30007461 (+) False LOC110509999
XR_005040397.1 mRNA downstream 42878 30264990 ~ 30291203 (+) False LOC110510009
XM_036967571.1 mRNA downstream 42880 30264992 ~ 30291203 (+) False LOC110510009
XM_036967573.1 mRNA downstream 44675 30266787 ~ 30291202 (+) False LOC110510009
XM_036967572.1 mRNA downstream 44676 30266788 ~ 30291202 (+) True LOC110510009
XM_021591288.2 mRNA downstream 430580 30652692 ~ 30669474 (+) False LOC110510020
TU2484310 other upstream 38185 30136723 ~ 30137320 (+) True G2173675
TU2484191 other upstream 221695 29952537 ~ 29953810 (+) True LOC110509998
TU2484176 other upstream 279226 29894094 ~ 29896279 (+) True G2173551
TU2484185 other upstream 304188 29869138 ~ 29871317 (+) False LOC110509988
TU2483968 other upstream 513271 29652569 ~ 29662234 (+) True LOC110509970
TU2484414 other downstream 97536 30319648 ~ 30323615 (+) True G2173754
TU2484421 other downstream 114740 30336852 ~ 30340691 (+) False G2173761
TU2484506 other downstream 241830 30463942 ~ 30468124 (+) True G2173841
TU2484723 other downstream 600502 30822614 ~ 30824144 (+) True LOC110510022
TU2485681 other downstream 1095725 31317837 ~ 31318377 (+) True G2174785

Expression Profile