RNA id: XM_039780319.1


Basic Information

Item Value
RNA id XM_039780319.1
length 2683
RNA type mRNA
GC content 0.50
exon number 16
gene id ptpn11a
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 29006621 ~ 29083011 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGACGTCCAATAATCGATTTGCTGTGAAGTCTCCGGGGCCGAGGcctagagacttttttttttttgtaacgaATACAATTTTTGTTTCGATGCCTATATTTCGGTGCCCGCTTTGACCGGGTGTGAACCGATGAAGCACTTTATCCTGTGATTGAAGCGGAAACGGTCCGAAACGTTAGCCAGCTAATtgtagctactgctaactgccaGCGAGGAAGTGAGGAACGACGAAAATGACATCTCGGAGGTGGTTTCACCCTAACATCACAGGTGTGGAGGCTGAAAACCTCCTGCTGACTCGTGGAGTGGACGGGAGCTTTTTAGCCAGACCCAGTAAGAGTAATCCAGGAGACTTCACCCTCTCAGTACGgcGAAATGGAGCGGTCACCCACATTAAGATCCAGAACACAGGAGACTACTATGACCTTTATGGTGGGGAGAAGTTTGCCACTCTGGCCGAGCTGGTGCAATATTACATGGAGCATCACGGCCAACTGAAAGAGAAAAACGGAGATGTTATTGAGCTCAAGTACCCGCTCAACTGTGCGGACCCCACATCCGAGAGATGGTTCCACGGTCACTTGTCGGGCCGGGAGGCCGAGAAGCTGCTGACGGAGAAAGGGAAGAACGGCAGCTTCCTGGTGAGGGAGAGCCAGAGCCACCCCGGGGATTTTGTTCTGTCTGTCCGGACGGGAGATGACAAGACGGACAGCAGCGACAGCAAACCCAAAGTCACTCATGTCATGATCCGCTGCCAGCATGACCTGAAGTACGACGTGGGCGGAGGGGAGAAGTTTGACTCCCTCACCGACTTGGTAGAGCACTACAAAAAGAACCCCATGGTGGAAACTCTGGGCACTGTGCTTCAGCTCAAACAGCCCCTGAACACTACTCGTATTAACGCTGCAGAGATTGAAAGTCGAGTTAGGGAGCTGAGCAAACTAGCGGAGGCCACAGACAAGGTCAAACAGGGCTTCTGGGAAGAATTTGAGACGTTGCAGCAGCAAGAGTGCAAGCTGCTCTACAGTCGCAAAGAAGGCCAGAGAGCAGAGAACAAAAACAAGAACAGATACAAGAACATTCTGCCATTCGACCACACACGTGTGGTGCTGAATGACAGGGACCCAAATGAGCCGGGCTCTGACTACATCAACGCCAATCTCATCGAGccggAGCTGGACCCGAAGTGTAACAGTACAAAGGCGAAGAAGAGCTACATCGCCACTCAGGGCTGTCTGCAGACCACCATCAGTGACTTCTGGAGGATGGTGTTTCAGGTGAACTCTCGAGTCATCGTCATGACCACCAAAGAGGTGGAGAGAGGAAAGAGTAAATGTGTGAAGTACTGGCCGGACATGTCGGCTCTGAAGGAGTACGGCGCGATGCGTGTTCGCAATGTCAGAGAGACGTCTGCACACGACTACATCTTAAGAGAACTCAAACTGTCCAAAGTCGGACAGggcAACACAGAACGTACAGTTTGGCAGTACCACTTCAGAGCGTGGCCGGACCACGGAGTCCCCACAGACCCGGGCGGCGTACTCGACTTCCTAGAGGAGGTCAACCTGAAGCAGGAGAGCATACTGGACGCTGGGCCTATAGCGGTACACTGCAGTGCAGGGATCGGGCGGACAGGAACATTTATAGTGATCGACATCCTGATAGATGTGATCAGAGAAAAAGGGGTGGACTGCGACATCGACGTGCCAAAGACCATCCAGATGGTCCGATCCCAGCGCTCTGGGATGGTGCAGACCGAGGCGCAGTACAGATTCATCTACATGGCTGTACAGCACTACATAGAAACGTTGCAGAGACGCATAGAGGAGGAACAGAAAAGTAAGATTAAAGGCCGCGAGTACACCAACATCAAGTACTCTTTGTCTGACCTGACTGGAGGAGAGCAGAGCCCTCTGCCTCCTTGCACTCCCATTCCTACTCCCACCTGCACAGAGATGAGGGAGGACAGCTCCAGAGTGTATGAGAACGTGGGCCTGATGCAGCAGCAGAAGAGCTACAGATGAGATTCACCTTTGACCCCAGTGCTCTTTCAGTTCCGGGATCTTGATACCTGACAGTTTTTTCGCCAGCCACACCGTGACGCCTGAGACTTGACCGTAATGACATGGAACAatggaaacacacaaaaaaacgtgAGAGAGACCCTGACGCCAGGGTCCTCCTGTTCTCGCTCATCTTACATGAACATTTGCCCTCTAGTTGAATTCTAAACCACTGTGATGATCATCCGAAGAGCCTTTTGAGAAGCCTAACATGCTAAATCCTactactaaacaacagttttgggTTAAGCCTTCGTAAATCTCACCCCAACAAGGGCTGCAAACAGCGAGCACTCTCCTCAGAGGGGGAAAAACCCTAGCTAACCTTTGCTcatctttatttttctgttttaccttttttttttgttttgtttaataacCAAAGGAAGGTTAtgtagattgattgattgattgtttggAGATGGAAGGGAGGAGTTTCCTGAAAAGGCCTGTGCCAAAACCACAAAAGGTTTTATCCACATTTCTCAGCCAATTAGAAGTCTCTATTCGGCCCGTTCAGCCTTTAAACGCGTTGGGAGACGAGGCCTTATATGTGGACAAAAGTCGGGGCAAATTTTCCAGTGATAGTTGTCTCGTTTTcactgtgttatatatatat

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241671 lncRNA upstream 27083 29031515 ~ 29032362 (+) True G178521
TU241643 lncRNA upstream 114001 28944507 ~ 28945444 (+) False G178506
TU241615 lncRNA upstream 151074 28904473 ~ 28908371 (+) True G178491
TU241588 lncRNA upstream 210562 28846471 ~ 28848883 (+) True G178468
TU241577 lncRNA upstream 227115 28831279 ~ 28832330 (+) True G178460
TU241920 lncRNA downstream 364813 29445053 ~ 29458536 (+) True G178710
TU241945 lncRNA downstream 448185 29528425 ~ 29531359 (+) True G178725
TU241959 lncRNA downstream 463919 29544159 ~ 29544741 (+) True G178728
TU241973 lncRNA downstream 586538 29666778 ~ 29667208 (+) False rasgrf2a
TU242082 lncRNA downstream 612198 29692438 ~ 29701839 (+) True G178835
XM_039780303.1 mRNA upstream 14314 29037069 ~ 29045131 (+) True eif2b1
XM_039778974.1 mRNA upstream 40674 28981477 ~ 29018771 (+) True clip1b
XM_039778973.1 mRNA upstream 40674 28981477 ~ 29018771 (+) False clip1b
XM_039778975.1 mRNA upstream 40674 28981477 ~ 29018771 (+) False clip1b
XM_039778976.1 mRNA upstream 78075 28979028 ~ 28981370 (+) True LOC120545038
XM_039780629.1 mRNA downstream 27976 29108216 ~ 29159101 (+) False rph3aa
XM_039780628.1 mRNA downstream 27977 29108217 ~ 29159101 (+) True rph3aa
XM_039780788.1 mRNA downstream 83992 29164232 ~ 29176814 (+) True pla2g3
XM_039779288.1 mRNA downstream 99572 29179812 ~ 29346058 (+) True ttc28
XM_039779290.1 mRNA downstream 99572 29179812 ~ 29346058 (+) False ttc28
TU241633 other upstream 114001 28944507 ~ 28945444 (+) True G178506
XR_005636601.1 other upstream 471419 28580268 ~ 28588026 (+) False LOC120544907
XR_005636773.1 other upstream 1361513 27656536 ~ 27697932 (+) False lhfpl2a
TU241015 other upstream 2048050 27010197 ~ 27011395 (+) False nln
XR_005636777.1 other upstream 2444486 26589511 ~ 26614959 (+) False LOC120546038
TU241682 other downstream 4709 29084949 ~ 29092326 (+) True G178529
TU242100 other downstream 662383 29742623 ~ 29744075 (+) True G178845
TU242091 other downstream 713904 29794144 ~ 29795314 (+) False LOC120545429
TU242148 other downstream 941079 30021319 ~ 30022217 (+) True G178881
TU242149 other downstream 941079 30021319 ~ 30022217 (+) False G178881

Expression Profile