GENE ID: ENSDARG00000040534

Symbol Location Gene type Genome version Species
epcam 13: 8840772 ~ 8843363 (+) protein_coding GRCz11 Danio rerio

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    • MARKER



    EXPRESSION

    Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
    PRJNA610520 (3.5dpf) caudal hematopoietic tissue baseline 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. Epithelial cells (cluster: 12)
    		 marker
    		 DOI:10.1016/j.cell.2008.01.025
    PRJNA610520 (4.5dpf) caudal hematopoietic tissue baseline 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. Epithelial cells (cluster: 9)
    Epithelial cells (cluster: 15)
    		 marker
    marker
    		 DOI:10.1016/j.cell.2008.01.025
    DOI:10.1016/j.cell.2008.01.025
    GSE144944 (fgfr3 -|-) cranial vault growth 1mpf, fgfr3 -/- Epidermal cells (cluster: 5)
    Epidermal cells (cluster: 8)
    Epidermal cells (cluster: 12)
    Epidermal cells (cluster: 15)
    		 marker
    marker
    marker
    marker
    		 DOI:10.1002/jbmr.4042
    DOI:10.1002/jbmr.4042
    DOI:10.1002/jbmr.4042
    DOI:10.1002/jbmr.4042
    GSE144944 (fgfr3 +|+) cranial vault baseline 1mpf, fgfr3 +/+ Epidermal cells (cluster: 9)
    		 marker
    		 DOI:10.1002/jbmr.4042
    GSE173972 (WT, ezh1+|+) embryo baseline 1.25dpf, Kdrl-positive embryos Epithelial cells (cluster: 4)
    		 marker
    		 DOI:10.1016/j.stemcr.2021.05.014
    GSE173972 (HET, ezh1+|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos Epithelial cells (cluster: 4)
    Epithelial cells (cluster: 11)
    		 marker
    marker
    		 DOI:10.1016/j.stemcr.2021.05.014
    DOI:10.1016/j.stemcr.2021.05.014
    GSE173972 (KO, ezh1-|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos Epithelial cells (cluster: 4)
    Epithelial cells (cluster: 10)
    		 marker
    marker
    		 DOI:10.1016/j.stemcr.2021.05.014
    DOI:10.1016/j.stemcr.2021.05.014
    PRJNA706197 (20hpf) embryo baseline 20hpf, FACS sorted sox10:nEOS cells Epithelial cells (cluster: 4)
    		 marker
    		 DOI:10.1016/j.celrep.2021.110140
    PRJNA706197 (24hpf) embryo baseline 24hpf, FACS sorted sox10:nEOS cells Epithelial cells (cluster: 2)
    		 marker
    		 DOI:10.1016/j.celrep.2021.110140
    PRJNA706197 (1.25dpf) embryo baseline 1.25dpf, FACS sorted sox10:nEOS cells Epithelial cells (cluster: 3)
    		 marker
    		 DOI:10.1016/j.celrep.2021.110140
    PRJNA706197 (18hpf) embryo baseline 18hpf, FACS sorted sox10:nEOS cells Epithelial cells (cluster: 2)
    		 marker
    		 DOI:10.1016/j.celrep.2021.110140
    PRJNA564810 (5dpf) embryo baseline 5dpf, a single-cell transcriptome atlas for zebrafish development Periderm cells (cluster: 4)
    		 marker
    		 DOI:10.1093/g3journal/jkac062
    PRJNA564810 (2dpf) embryo baseline 2dpf, a single-cell transcriptome atlas for zebrafish development Epidermal cells (cluster: 15)
    		 marker
    		 DOI:10.1093/g3journal/jkac062
    GSE150498 (DSS treated) intestine disease 6dpf, DSS treated Epithelial cells (cluster: 4)
    		 marker
    		 DOI:10.1038/s41586-021-03484-5
    GSE163907 (24hpf) trunk baseline 24hpf, trunk tg(sox10:GFP) positive cells Otic (cluster: 7)
    		 marker
    		 DOI:10.7554/eLife.66078
    GSE158099 (WT) whole body baseline 2.5dpf, cd41:GFPlow-WT Epithelial cells (cluster: 4)
    		 marker
    		 DOI:10.1182/bloodadvances.2020003969
    GSE158099 (runx1 -|-) whole body hematopoietic 2.5dpf, cd41:GFPlow-runx1-/- Epithelial cells (cluster: 1)
    Epithelial cells (cluster: 6)
    		 marker
    marker
    		 DOI:10.1182/bloodadvances.2020003969
    DOI:10.1182/bloodadvances.2020003969
    GSE158099 (WT) whole body baseline 6dpf, cd41:GFPlow-WT Epithelial cells (cluster: 7)
    		 marker
    		 DOI:10.1182/bloodadvances.2020003969
    GSE158099 (runx1 -|-) whole body hematopoietic 6dpf, cd41:GFPlow-runx1-/- Epithelial cells (cluster: 3)
    		 marker
    		 DOI:10.1182/bloodadvances.2020003969
    PRJNA554650 (6.5dpf) brain baseline 6.5dpf, whole brain of nr1d1:VNP fish Endothelium (cluster: 17)
    Microglia (cluster: 18)
    Cranial ganglion (cluster: 22)
    		 potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    GSE158142 (5dpf) brain, eye baseline 5dpf, untreatment Eye (cluster: 13)
    		 potential marker
    		 NA
    GSE158142 (8dpf) brain, eye baseline 8dpf, untreatment Eye (cluster: 17)
    		 potential marker
    		 NA
    GSE158849 (labeled) embryo baseline 6hpf, WT, 4sUTP injected (labeled) Enveloping layer cells (cluster: 7)
    		 potential marker
    		 NA
    GSE158849 (unlabeled) embryo baseline 6hpf, WT, 4sUTP injected (unlabeled)
    GSE106587 (WT) embryo baseline 12hpf, 6 somites, wild-type TLAB embryo Epidermal cells (cluster: 4)
    		 potential marker
    		 NA
    GSE106587 (MZoep mutant) embryo baseline 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo EVL, Periderm (cluster: 3)
    Epidermal cells (cluster: 8)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE126647 (control) embryo baseline 1.17dpf, control nkx2.5:ZsYellow+ cells SHFP (cluster: 10)
    		 potential marker
    		 NA
    GSE126647 (Pbx4-depleted) embryo growth 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells SHFP (cluster: 10)
    		 potential marker
    		 NA
    PRJNA734348 (shield, dnmt1) embryo growth 6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV) Germ ring (cluster: 1)
    		 potential marker
    		 NA
    GSE168695 (5dpf) embryo baseline 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos Ionocyte progenitors (cluster: 8)
    		 potential marker
    		 NA
    PRJNA640816 (2dpf) embryo baseline 2dpf, FACS isolated -4.9sox10:EGFP+ cells Otic (cluster: 10)
    		 potential marker
    		 NA
    PRJNA640816 (2.9dpf) embryo baseline 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells Melanoma cells (cluster: 2)
    		 potential marker
    		 NA
    PRJNA564810 (1dpf) embryo baseline 1dpf, a single-cell transcriptome atlas for zebrafish development Epidermal cells (cluster: 12)
    Epidermal cells (cluster: 14)
    Epidermal cells (cluster: 22)
    Mucous secreting cells (cluster: 24)
    Integument Ionocyte (cluster: 27)
    		 potential marker
    potential marker
    potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    NA
    NA
    GSE161712 (M. marinum) granulomas disease adult, infected with bacteria of M. marinum
    GSE158142 (12hpf) head baseline 12hpf, 6 somites, untreatment Epidermal cells (cluster: 10)
    Placode (cluster: 11)
    Placode (cluster: 6)
    		 potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    GSE158142 (14hpf) head baseline 14hpf, 10 somites, untreatment Epidermal cells (cluster: 6)
    		 potential marker
    		 NA
    GSE158142 (16hpf) head baseline 16hpf, 14 somites, untreatment Pharyngeal endoderm (cluster: 10)
    Epidermal cells (cluster: 12)
    Placode (cluster: 13)
    Placode (cluster: 5)
    		 potential marker
    potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    NA
    GSE158142 (18hpf) head baseline 18hpf, 18 somites, untreatment Epidermal cells (cluster: 11)
    Epidermal cells (cluster: 12)
    Placode (cluster: 4)
    		 potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    GSE158142 (20hpf) head baseline 20hpf, 21-22 somites, untreatment Epidermal cells (cluster: 3)
    Epidermal cells (cluster: 8)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE158142 (24hpf) head baseline 24hpf, untreatment Epidermal cells (cluster: 5)
    Epidermal cells (cluster: 7)
    Periderm cells (cluster: 8)
    		 potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    GSE158142 (1.5dpf) head baseline 1.5dpf, untreatment Epidermal cells (cluster: 10)
    		 potential marker
    		 NA
    GSE158142 (2dpf) head baseline 2dpf, untreatment Epidermal cells (cluster: 5)
    		 potential marker
    		 NA
    GSE158142 (3dpf) head baseline 3dpf, untreatment Epidermal cells (cluster: 4)
    Periderm cells (cluster: 9)
    		 potential marker
    potential marker
    		 NA
    NA
    PRJNA415636 (pancreas, liver) hepatopancreas baseline adult, Zebrabow M, pancreas and liver Pancreas duct epithelial cells (cluster: 7)
    		 potential marker
    		 NA
    GSE150498 (untreated ctrl) intestine baseline 6dpf, untreated ctrl Epithelial cells (cluster: 11)
    Epithelial cells (cluster: 5)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE150498 (wildtype, 1X DSS) intestine disease 6dpf, wildtype, 1X DSS Epithelial cells (cluster: 4)
    		 potential marker
    		 NA
    GSE137784 (HCC, CreLox) liver disease 6mpf, male, isolated from the zebrafish without HCC
    GSE137784 (no HCC) liver baseline 6mpf, male, isolated from the CreLox zebrafish with HCC Epidermal cells (cluster: 7)
    		 potential marker
    		 NA
    PRJNA605021 (supporting cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae Support cells (cluster: 2)
    Support cells (cluster: 7)
    		 potential marker
    potential marker
    		 NA
    NA
    PRJNA605021 (hair cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae Epidermal cells (cluster: 2)
    Support cells (cluster: 4)
    		 potential marker
    potential marker
    		 NA
    NA
    PRJNA668529 (3d) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 days Neuronal progenitor (cluster: 4)
    Endothelium (cluster: 7)
    		 potential marker
    potential marker
    		 NA
    NA
    PRJNA668529 (3h) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 hours Endothelium (cluster: 3)
    Basal cells (cluster: 4)
    Endothelium (cluster: 7)
    		 potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    PRJNA668529 (control) olfactory rosette baseline 3mpf, intranasal PBS Endothelium (cluster: 7)
    		 potential marker
    		 NA
    GSE148591 (6mpf) pituitary baseline 6mpf, male, Sox17:CreERT2 Prop1+ group (cluster: 9)
    		 potential marker
    		 NA
    GSE148591 (3mpf) pituitary transplant 3mpf, graft transplantation during early embryogenesis Somatolactotropes (cluster: 1)
    Prop1+ group (cluster: 11)
    Lactotropes (cluster: 4)
    		 potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    PRJNA415636 (primary pancreatic islet) primary pancreatic islet baseline adult, Zebrabow M, primary pancreatic islet Pancreas duct epithelial cells (cluster: 7)
    		 potential marker
    		 NA
    GSE122680 (24hpf) retina baseline 24hpf, WT, untreatment Amacrine cells (cluster: 7)
    		 potential marker
    		 NA
    PRJNA551501 (2mpf) thyroid gland baseline 2mpf, Tg(tg:mVenus-T2A-NTR) Gills (cluster: 13)
    Non-follicular epithelium (cluster: 5)
    Thyrocytes (cluster: 7)
    		 potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    PRJNA551501 (8mpf) thyroid gland baseline 8mpf, Tg(tg:mVenus-T2A-NTR) Non-follicular epithelium (cluster: 3)
    Gills (cluster: 8)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE152982 (wild type) trunk baseline 1.25dpf, untreatment Mucous secreting cells (cluster: 16)
    Epidermal cells (cluster: 3)
    Ionocytes (cluster: 8)
    		 potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    GSE131136 (all) trunk, skin baseline 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
    GSE176129 (pdgfrb-positive) whole body baseline 5dpf, FACS-isolated pdgfrb-positive cells Epidermal cells (cluster: 14)
    Epidermal cells (cluster: 29)
    Neuromast cells (cluster: 32)
    Periderm cells (cluster: 36)
    		 potential marker
    potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    NA
    GSE158099 (WT) whole body baseline 10dpf, cd41:GFPlow-WT Epidermal cells (cluster: 10)
    		 potential marker
    		 NA
    GSE158099 (runx1 -|-) whole body hematopoietic 10dpf, cd41:GFPlow-runx1-/- Epidermal cells (cluster: 8)
    		 potential marker
    		 NA
    GSE158099 (WT) whole body baseline 16dpf, cd41:GFPlow-WT Epidermal cells (cluster: 13)
    		 potential marker
    		 NA
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/- Epidermal cells (cluster: 10)
    Epidermal cells (cluster: 12)
    Epidermal cells (cluster: 8)
    		 potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/- Epidermal cells (cluster: 12)
    Epidermal cells (cluster: 14)
    Epidermal cells (cluster: 9)
    		 potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    PRJNA415636 (brain) brain baseline adult, Zebrabow M, brain
    GSE158142 (15dpf) brain, eye baseline 15dpf, untreatment
    GSE151354 (wild type) cartilage baseline 21dpf, wild type
    GSE151354 (nkx3.2 mutant) cartilage growth 21dpf, nkx3.2 mutant
    GSE130526 (fin) dorsal and anal fin baseline adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
    PRJNA656271 (24hpf) embryo baseline 24hpf, FACS-isolated EGFP+ cells
    PRJNA734348 (dome, dnmt1) embryo growth 4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
    PRJNA656271 (1.5dpf) embryo baseline 1.5dpf, FACS-isolated EGFP+ cells
    PRJNA734348 (shield, control) embryo baseline 6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
    PRJNA706197 (12hpf) embryo baseline 12hpf, FACS sorted sox10:nEOS cells
    PRJNA734348 (dome, control) embryo baseline 4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
    PRJNA706197 (14hpf) embryo baseline 14hpf, FACS sorted sox10:nEOS cells
    PRJNA415636 (heart, blood) heart, blood baseline adult, Zebrabow M, heart and blood
    PRJNA754013 (zebrafish) hypothalamus baseline adult, male, female, untreatment
    GSE150498 (wildtype, untreated) intestine baseline 6dpf, wildtype, untreated
    GSE150498 (nod2-|-, 2X DSS+BZA) intestine disease 6dpf, nod2-/-, 2X DSS+BZA
    GSE150498 (wildtype, 2X DSS) intestine disease 6dpf, wildtype, 2X DSS
    GSE150498 (nod2-|-, untreated) intestine disease 6dpf, nod2-/-, untreated
    GSE150498 (wildtype, 2X DSS+BZA) intestine disease 6dpf, wildtype, 2X DSS+BZA
    GSE150498 (nod2-|-, 2X DSS) intestine disease 6dpf, nod2-/-, 2X DSS
    GSE150498 (nod2-|-, 1X DSS) intestine disease 6dpf, nod2-/-, 1X DSS
    GSE137784 (HCC, HepABC) liver disease 6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
    GSE123241 (fgf3 siblings) neuromast regeneration 5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory
    GSE123241 (wild type) neuromast baseline 5dpf, wild type during sensory hair cell regeneration, lateral line sensory
    GSE123241 (fgf3 mutants) neuromast regeneration 5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
    GSE122680 (2dpf) retina baseline 2dpf, WT, untreatment
    GSE122680 (1.5dpf) retina baseline 1.5dpf, WT, untreatment
    PRJNA641144 (P_INV) tumor disease adult, ZMEL1-INV cells in vivo primary tumors
    GSE159709 (melanoma) tumor disease adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
    PRJNA641144 (M_INV) tumor disease adult, ZMEL1-INV cells in vivo metastases
    PRJNA641144 (M_PRO) tumor disease adult, ZMEL1-PRO cells in vivo metastases

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