RNA id: TCONS_00011307


Basic Information

Item Value
RNA id TCONS_00011307
length 5863
RNA type mRNA
GC content 0.44
exon number 6
gene id XLOC_005698
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 1542493 ~ 1552927 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGatgtacttattgtgttttaGGCTCCGAGATCTGGAAGGCATCAGCAAGTCTCTTAAGTACTACAAAGACACATACAACAGTCTGGACGACTGGAGCAAAGACATGGAGACCAAGCAGCTCAGAGCACAAGAAAATCAACCTGAGGACAGCAAAGCTCTGGCTGAGTTCCTAAACCAGCAGAAAGTGTTGGTGGCGGAGATTgagcaaaaacaaagcaaaatggaGGAGTGCCAGAAGTATTCGGAGCAGTATGCTGTCGGAGTGAAGGAATATGAACTGCAGTTAATGACTTATAGAGCCATGGTGGACTCTCAGCACAAGTCCCCTGTGAAGAGGAGGAAGATGCAGAGCTCATCTGATGTGATCCAGCAAGAGTTTATGGACCTTCGTACACGCTACACAGCCCTGGTTACTCTCATGACACAGTATGTGAAGTTTGCTGGTGAAACACTGAAGAGAGCTGAAGAGGATGAGAGGAGGAAATCATTGGAAAATGCGGAGTACCTAAGCTGGACCGAGAGCATGGAGCTGCAGAAAGCTGCGAGCGAAGAGGAGATCACCAGACTCCGGCGTCAGGTACTGGAACTGGAGGCTTCATTGTCTAACAGGCAACAGCAGCTGGAGATCCTCGGGGCAGATCTCGAGATGCAGAAAAAGTCAATCGAGGACTTGACCTTGCAGAAATCAAAGGCTGAATATGAGGCCCAGAAATATCGTATAGAACTTGAGGGTGTGATCAAAAGCAAAGGATCTACTGATCAGGAATTAAATCGTGCTCGACAACAAGTCCAGCAATCAGAAGCCAAACAGGCATCTCTAGAAGAGAGCCTTCGTAACCTGAAAAAGAGCATTGAGGAGAGTACATTAGCCCGTAAGAAGCTGGAGGATCATTTACGGCGTAAGGACAGTGATGTACAGGGTTTGGAGGAGCACAGTCGTACGCTAGAGCGGGAATTGAGGGCTAAGGAGGACACAGAAGCAGAGCTGCTCAACCAAGTGAGAATCATGGAAATGGATCTGGCCCACAAGTCAGACGTCAGAATGATACAAGGCGAATCCTTGTTGGGTTTCTCCAAAACAGGTGCGCTGTCAACATTTACAAGCAGTTCTTCAGTAATACACTCTGAATCTGAAGCAGAAGTCCTGCAAGGCAAAATGGAAGAGCTGATACTGGGTAAGAAGCGAGCTGAGAGCGAGATCAAGACTTTGAAGTCTGAATTAAACTCAGTTATTGTCCACAAAACTGTGGCTGATGAGAAAGCTCATCGTTTCAAAGAACTCTTAGACGAGGCCAACAACAGGCTGTTGAAGATTCAAGTGGAAATGGACGCAGATCGCTCCAACATGAGACAGAAATCAGAAGAGCTGAGGCAAGAAACTTCTGAACTAAAGAAGTCCGTCTATGTATATCAAGAACAAATCAAGTCTCTCCAAAGAGACAAATCAGCTCTGGAGCAAAGGCTGCTTTTCCAGAAGACCGAGGTGGATGGTCTTAAAGATCAGCTCAAGGTCAATCAAGGTAAACTCCTGCAGTGGACCTCTCTGGAGCAGGAGAGCACTCATAAGTTAAGATGCATGGAAGATGAGTTGTCTAGCAAACAGACGGAAGTAGAGCAGATGGCATTCAAAGTCAATGAACTTAATCGAAAAAATCAGCTACTGGAAAGTGATAGCCGACATCTGAAGGTAAGTATCGAGTCAGTCCAGCAAGACAAATCTCATGTTGAGCAAAAGTTTAAAACCCTGAAAGGGGAGGCAGATGTTTTGAAGGAGCAACTCCAGAGAGCGAAAGAAGAAATCAACCTGAAGACAAGAACCGAGAAGGAAgctcaaatcaaatttaaaaaccTTGAATTGGAGCTTCAGAAAAGCTCTTTGCAAGTGACACAGCTTACTAAGAAAGTAGAAGAACTCAAGAAGATAAACACGGACACTGAACGCTCGATTAAAAATGTGAAAGCAGAGCTTGATAGAGCGTGCATTGAGATTGGAAGTAAGGAACAGCAAATAAACATACTCAGATCCCAAGCAGAAAGTGCGAAATCTCAGGTAAAAATCATTGAAGAGGAACTCTTGAGTCAGACCCAGGTATCTCACGAGCTTCAAATCAAACTTAAAGATTGCAACGATGAAGGTAAAAAGACAACAGAGCTGCAGCAGAAGATCAAATCTCTCGCGTTGACCATCACCAGCTATGAAAAAGAAATCTCAAATCTCaaagcagagctgagctccataTGCACCGAGAGGAACCTTGCCAATCAGAAAGTTCAGGAACACAAAGTCGAGATAAATAGCCtcaatttatctttaaaaaaagccATCGGAGAGTCCCAAAGGGAGTCGTCTGAAGGTAAGAAGAACATGTCTAAGGTACGAGAACTTGAAAACGAGCTCATGAAATGTAAGCAGACGATTAGCAGGATTAGCGGAAGCTCAGAGAAAACCACAGTAAGCCTGAAACAGGACATCTCCTCCCTTCAGAGGGATAAACAAACAGCTGACCAGAAGTTGCATGTCTTAAAAAGTGATTTTGATGATCTTAGTGCTACTCTAAAAAGAACAAAAGATGAGCTCCAGCGAGTGACTGAAGAAAACAGGCTAAATCTGTCCAAAGTTAAAGAGTTTGAGGTGGAGATGCAAAGAAAGAGTTCTGTTATGCGGGAAATGAGCTCGAGTGCAGATAAATCTGTGCTAAATTTAAAACAAGAGCTGGTCACTTCTCAAAAGGGCAGGAATGTTGCGGAGGACAAAATCACAAGTTTAACTCTCCAAACGTCAGAGTTGAAGCAGAAGTTGAGGCAAACCCAAGAAGAGCTTAAACAGAAGCAAAATCAAGTGTCAGCTGCAGAGTTGAGGTCACAAAAGCTCGGCGAACAATTGGACAACTGTAAAAAGATGCTTGACGATCTTAAAGGCAAACTCGACTTGCAGAAGAAAGGCTACGAGACTCAACTACAGTTAGTGCAGGCTGAAATGGAGCAAAAGCTTTCGTTGCAGGAGTCACGCTTAAAGTTGGAGCATGAGAGGAGATCGAAGGAGCAGTCCCACAGTATGGAAACTGTGGAAAGAGACAAAAGGCTCCTGTCTCAAGAAGTGGAGAAGCTTAAAGCAATAATTGCTAATGCAACTAAAGCCAAGCAGGAGGCTGAACAAAACCTCTGTACCGTACGCACACAGCTTGATGAATCTGACCGACAGAGAGGAATCCTTGACCTTGAACTTCTCAAAGCGAAATCAAAGATTTCTGAGATGGAAACAGAAAAGATCCGGGTAAAATCCAGCATTTTTCAACTTGACAGTGTTCATAAGGACAGCTCGCATGAGATATCCAGGTTAAAGGAAACACTGACTGAGACAGAGCAGAAACTGGATATCTCGGAAAGGGAATCAAGATCTCTAAAAGAGCAAATTGTTTCATACATCAAGGAAATGAAGTCTCTGCAGGAGACGAATCTGAAGCTTGAGGTGGCGATGAGCTCTGAGCAGAAACATCTGAAAGATCTGCAGGTCAATCATCAGTGTGCGAAAGACGAAGAACTGGCAAAGCTGAGGACTGAACTTCAGCTCACTCAGAAAATTGTGGCTTCATATGAGGAAGCGAAACTGAACCTGGAGGAAGAACTAAAGAAGATGAAAATGAGCTCTGAGATTGCAACACTGGAAAAGGAAAAAGTGCTGGAGGAACTAAGGAAAGTCACACAAAGTAATATGCACGTAATCAATGAGAAAACTGTGGAATATTCTACCAAGAAAATGGACAATTCTGTTCCACTTCAAAACTCAAATGCATTTGAAATGCACACAAACCAGGTGATGGTTGGTAACAGTCAGAGCAACAATACTGAGTCCATACTCAGGAAGCGCTCTATTTCTGATAAAGGCCGGTCAGGTAAAAGCCAGATGGTTTCTTTCAGTATCAACGACTCTGAGTCCTCTATCAATCTTGCTTCTGACTCGCCTATATCAAGCCATTCGAAAGGGCTAACAATGGAATCATCTTCCAATAAAATTCAAGGTCTCAGAGGTCGGATAAGTATTAAGAAGCTGCTAAAATTGAGAATAATCACTCAGGAGATTGCACTCAAGTTGCAAACAGGTCTCATCACTATTGAGGAGATAGAATCATCCCTTGCTGAATTTCTAGGCAAACCGTTCTCAATTGCAGGAGTTTACATGGGGTCTACCAAGAAAAAGCTGTCTTTCCTAGATGCTGTTGCTGGAGGATTTCTGCCTAAAACTTATGCCGTTGAGTTTTTGGAAGCGCAAGCTGCCACGGGATGCATTATTGATCCAATAACAGGTGAAGGTTACTCCCCTTCCGATGCTTTTGAGAAAGGAATCATTACTGAGGATCTCAAGGACAAAATAAGTGATGCATACAAAGCAGTAAGTGGCTATACTCATGCCGGGAAGATTCTTTCAGTGTTTCAGGCTATGGAGCAGAGAATTCTAGACAGACATCGAGGGAAAGCGATAATGGAAACTCAGATCGCGACAGGAGGCTTGATTCACCCATTGATTGGAAGTAGGGTACCTATGGATAGTGCACTGGAACAGGGGCTCATAAATCAAGCCACCCTTCAAACTCTCTATGATCCGGTGAGCAACCCAAAGGATTTCCACCACCCAGAAACAGGACAGAAGGCATATTACAGTGAACTACTGCGAAGCTGTGTATATGATGTCAATGGTGGAGTGTATCTTCTACCATTTGGTGAGCAGAGTCTCTACACCCTCTCACCATCTAGCAAGCACAGAATATCAGTCATCAACACCTCTAATGGTGATAAAATGTCAGCCTATGAAGCCTATAAGGCTGGTATTGTTGACAAGAGAACCTACCTGTTTCTTTCACACCAAGAGAGCGAATGGCAGGAGATTACAATCATGGACTCGAGTAGGAATCTTCTACACATCCTAAGCGACCCTAAGACCGGACGGCAGATTTGCATCGAAAAAGCTCTCAGTCTGAAAACTCTCCAAATGGAGGAGCTGGATAGCTATCGCAGTGGTCATCTCAGTGCATCCGAGCTTGCTGATGTTTTGATTTCCAGAAGAGTTGTCTATAAGCTTCCCAATAGTCCTATTGCAGGACTTTGGGATGTTTCTTTAAAGAAGCGACTCCCGGTTTTCAAAGgacaccagctgaaccttgtggACCGACTCTCTGCAGTGAGGATGCTAGAAGCTCAGGCATGCACCGGAGGAATATGTGATCCAGCTTCTGGAGAAAGAGTTCAGATTTCACAAGCACAGCATCGAGGACTTTTAGACGAGAGTTTTGCCAGACAGATCCAACAATGTGAGCAAGCCTACGATGGGATCACTCACCCTCTGAATGGAAAGACCTTGAATGTGGCTCAAGCCATGCAGGAGAACCTCTTCCCGAAAGATGTTGGGTTGAGATGTCTTGAGTTTCAGTTGGCAACCGGTGGGATCATAAACCCAGAAACTAAAGAGAGAGTCTCGCTGGAGGATGCCTTGCAGAACTGCTTGATTGACAAAACCACCGCTGCACATCTTCAACATGACAATTCCCATTCAAAATGCATCACCTGCCCTAAAACCAAGCGGAAAATCTCTTTCAAGGAAGCTCTAGACAAGAGCGTATTTGACAGCCACACTGGGTTTGTCCTTCTTGAAGTAACAAAGCCTCATAGTACTGCCAATACTTCAGCTTTCCAATACTTCTATACTTACAGACACTTCTGATCAGATCTAAAGTCAGACAGTTTTGCTGAATGTTTTATAAATAGCAAAGAAATACTTATCGTGTATATTTGCCACCAGGAGAatagtagtatatatatatatatatatatatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000181968

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013534 lncRNA upstream 556230 973009 ~ 986263 (+) True XLOC_005687
TCONS_00013530 lncRNA upstream 680597 859192 ~ 861896 (+) False XLOC_005685
TCONS_00013535 lncRNA downstream 430384 1983311 ~ 2029457 (+) False XLOC_005705
TCONS_00013536 lncRNA downstream 430384 1983311 ~ 2033043 (+) False XLOC_005705
TCONS_00013537 lncRNA downstream 433419 1986346 ~ 1999261 (+) False XLOC_005705
TCONS_00011315 lncRNA downstream 457360 2010287 ~ 2029457 (+) True XLOC_005705
TCONS_00013539 lncRNA downstream 596843 2149770 ~ 2153016 (+) False XLOC_005706
TCONS_00011305 mRNA upstream 7614 1439152 ~ 1534879 (+) True XLOC_005696
TCONS_00011304 mRNA upstream 45506 1430094 ~ 1496987 (+) False XLOC_005696
TCONS_00011303 mRNA upstream 147491 1381953 ~ 1395002 (+) True XLOC_005695
TCONS_00011301 mRNA upstream 167566 1357552 ~ 1374927 (+) False XLOC_005694
TCONS_00011308 mRNA downstream 22349 1575276 ~ 1719930 (+) True XLOC_005699
TCONS_00011309 mRNA downstream 174026 1726953 ~ 1786145 (+) True XLOC_005700
TCONS_00011311 mRNA downstream 246076 1799003 ~ 1866711 (+) True XLOC_005702
TCONS_00011312 mRNA downstream 319840 1872767 ~ 1906732 (+) True XLOC_005703
TCONS_00011313 mRNA downstream 375434 1928361 ~ 1981726 (+) False XLOC_005704
TCONS_00011289 other upstream 693067 844143 ~ 849426 (+) False XLOC_005684
TCONS_00011277 other upstream 1031354 502319 ~ 511139 (+) True XLOC_005673
TCONS_00011274 other upstream 1104031 438347 ~ 438462 (+) True XLOC_005670
TCONS_00011310 other downstream 212580 1765507 ~ 1765622 (+) True XLOC_005701
TCONS_00011320 other downstream 833486 2386413 ~ 2386533 (+) True XLOC_005710
TCONS_00011338 other downstream 1280165 2833092 ~ 2833207 (+) True XLOC_005718
TCONS_00011360 other downstream 2409840 3962767 ~ 3966255 (+) True XLOC_005731
TCONS_00011389 other downstream 4432849 5985776 ~ 6001981 (+) True XLOC_005757

Expression Profile

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