RNA id: TCONS_00000403


Basic Information

Item Value
RNA id TCONS_00000403
length 1733
RNA type mRNA
GC content 0.53
exon number 4
gene id XLOC_000245
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 19602389 ~ 19632153 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGATGGGAGCTTTGTTTCTTCTCGTTACGCAAGAGAAAAGGGCAGCGATGAGCTCTACATCTGATCAAATGCTAGCTGGAAACAGTATTGTCCGAGGTGATCTGCCCAGGTGAGGTGGTGTGGCGCTGACCGATATGGAGGTGGGAGACCTGCCTGTCGAGCTTTGGCGCCTCATCTTGGCCTACTTGCCTCTGCCCGATCTAGGCCGCTGCTGTCTGGTGTGCAGGGCCTGGAGGGAGCTCATTTTGAGTTTGGATAGTACACGTTGGCGCCAGCTCTGTCTAGGATGCCCTGAATGTCGGCACCCAAATTGGCCTCGCCGCCCCCACCTGCCCCCGGCCTCCTGGAGAGAGGCTCTCCGTCAGCACGCTCTTGCCAGTCGTACTTGGACCCAGAACGGCTCAGACCTCCACTCGTCTGCCTGCCTCCACCTCTTCCGGCGGAGGAAAGACCGCAGGGTTTGGCATGTTGCTACTGTGGCGGGGGGCGGATATGAGAGTCTCAGGGGGGCACTGGCTGTGGCTGGCCCGTATGACAAGGTGGTGCTCCATCCGGGTGTATATGAGGAACAGGTGGAGGTGGCTCTTAAAGTGCCTGTGGAGATTGTTGGAATGGGCAAGCTGGGGGACGTGTCATTGTTGGTGAGCTTTGATCAACAGTGCCCAACGGCGAGGCTGTGCAATGTGGTCTTTATGCCAGCCTGGTTTTCACCTGTGGTTTATAAGACATCTTCTGGGCATGTCCAGTTGGACAACTGTAACTTTGAGGGCTGTCAACTGCATATCCGTGGTCCAGGAACGTGCCAGGCTCGTTTCTGTTCTTTCGCCCAAGGCAGCTCTGCCCATTTTCTTGGTGTGACCATCAGTTTAATGGACAGTTGTGAATTCTCAGGGGGCGATTCTGCATCTGTCACTGTGGAAGGTCCTCCGGTCTCTGAACGAAACTGGGCGTTCAAACACCTGGTCGCCTTGGCCAAGACCTTCACCATGATGACTAGTATTGGGTCGACTGAAATGTCAAATCAAGGCAGGAAGGACAGTGTGAGCACTGGTAGTAATGGAAACTCCCCTTTTGAAGGAATTAACACAATGGAGGACTGGAGTAAACCGGAAGTAGATTGGGAAACAAACTGGGCAAAACAGAAAGGTGGAGATAGTCTCCTTCCAGGTCAGGATGGTACCATGATTGAGGAGGACGGCATGGAAACTTCTAGTGAATCAagtgaagaagatgatgatgatgatctagATGGCGAGAAAAGCACAGGATTGAAACTCTCATATGACCAGCATGGATTAGCGCATCTCTCCATGACGGATATGCCCAATTCTGCGTTTCCTACGCTGTTGAATCTGTCTGCAGAGCTGCAGAAGGATGCAGAGGCACGGGATTTGGCTGCATCAGTTCAAGGCTGCCTGCTGCGTCGCTGTCTGCTACGGGATGGAAAAGGTGGTGTGCATCTGTGCAATCATGCTCAAGCTCGACTGGAGGCCAATGTGTTCAGGGGACTCAATTATGCAGTGCGCTGCATCCAGAATGCCAAAATGGTGATGTTGCGTAATGAAGTGTGTGGGTGCAAGGCATCTGGTGTGTTCCTGCGACTCTCCGCTCAAGGTCTCATCGCTGAGAACAACATTCACTCCAATGGAGAAGCAGGACTAGACATCCGCAAAGGGGCTAATCCTATCATACTGGTACACAGAAGATgcacaaataaaacagataatgCTCAA

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-090313-270 Predicted to be involved in protein ubiquitination; regulation of apoptotic process; and ubiquitin-dependent protein catabolic process. Orthologous to human FBXO10 (F-box protein 10).

Ensembl:

ensembl_id ENSDART00000088933

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000398 lncRNA upstream 136169 19461925 ~ 19466220 (+) True XLOC_000242
TCONS_00000397 lncRNA upstream 139926 19458980 ~ 19462463 (+) False XLOC_000242
TCONS_00000395 lncRNA upstream 164712 19433007 ~ 19437677 (+) False XLOC_000242
TCONS_00003061 lncRNA upstream 337419 19253027 ~ 19264970 (+) True XLOC_000239
TCONS_00003060 lncRNA upstream 443104 19113197 ~ 19159285 (+) True XLOC_000238
TCONS_00000412 lncRNA downstream 198768 19808441 ~ 19821195 (+) False XLOC_000250
TCONS_00002828 lncRNA downstream 414259 20023932 ~ 20027926 (+) True XLOC_000253
TCONS_00002829 lncRNA downstream 417216 20026889 ~ 20029066 (+) True XLOC_000254
TCONS_00003062 lncRNA downstream 536732 20146405 ~ 20147549 (+) True XLOC_000256
TCONS_00003063 lncRNA downstream 1327052 20936725 ~ 20938443 (+) True XLOC_000259
TCONS_00000402 mRNA upstream 40588 19538299 ~ 19561801 (+) True XLOC_000244
TCONS_00000401 mRNA upstream 65030 19535144 ~ 19537359 (+) False XLOC_000244
TCONS_00000399 mRNA upstream 84598 19515228 ~ 19517791 (+) True XLOC_000243
TCONS_00000394 mRNA upstream 135936 19433004 ~ 19466453 (+) False XLOC_000242
TCONS_00000396 mRNA upstream 135937 19434198 ~ 19466452 (+) False XLOC_000242
TCONS_00000406 mRNA downstream 7126 19616799 ~ 19632086 (+) True XLOC_000245
TCONS_00000407 mRNA downstream 39872 19649545 ~ 19665774 (+) True XLOC_000246
TCONS_00000409 mRNA downstream 98835 19708508 ~ 19756237 (+) False XLOC_000248
TCONS_00000410 mRNA downstream 98835 19708508 ~ 19756359 (+) True XLOC_000248
TCONS_00000411 mRNA downstream 155322 19764995 ~ 19802602 (+) True XLOC_000249
TCONS_00000400 other upstream 62750 19535120 ~ 19539639 (+) False XLOC_000244
TCONS_00000377 other upstream 1740461 17858380 ~ 17861928 (+) True XLOC_000224
TCONS_00000369 other upstream 2080213 17513515 ~ 17522176 (+) True XLOC_000219
TCONS_00000367 other upstream 2833580 16768683 ~ 16768809 (+) True XLOC_000218
TCONS_00000364 other upstream 2987800 16600698 ~ 16614589 (+) True XLOC_000215
TCONS_00000408 other downstream 96026 19705699 ~ 19705832 (+) True XLOC_000247
TCONS_00000413 other downstream 198778 19808451 ~ 19815449 (+) False XLOC_000250
TCONS_00000414 other downstream 205192 19814865 ~ 19819096 (+) True XLOC_000250
TCONS_00000420 other downstream 365918 19975591 ~ 19980987 (+) True XLOC_000252
TCONS_00000430 other downstream 1644680 21254353 ~ 21254482 (+) True XLOC_000260

Expression Profile

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