RNA id: XM_034300728.1


Basic Information

Item Value
RNA id XM_034300728.1
length 8986
RNA type mRNA
GC content 0.53
exon number 53
gene id acaca
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 15486898 ~ 15527406 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATCACACCACAGTGGTGTCGCTGTCAAAGCGGTGCTTCGCGGAAATGTGAGGCTGTAGCCAGCGCTGGAGGacgagacatgctgttatttagaggacaaaataagtaaaaatatatatatatagttaattcGTCGGAAATACCTCTTCAGAATAGCTTGCCGACTCATTTCTCACGTGTTCGGAGCCTGCCAGTGTCGTCCGGCCATGGCGGAGCAGGATCCCCCGGCGGAGAAGCCTCCGGCCGCCTCGCACTTCATCATCGGGTCCGTGTCGGAGGACAACTCTGAGGACGAGACTCTGAGCAAGTTGGAGCTGTCGGCGGAGGACAAGGAGTGCTCGGAGTCTCCGTCCTCTCTCAGCTCGGACAGCACTTTCGAATGCCTGGACGGGCCGTTGCACAGCATGAGgCCCAGTATGTCTGGTCTGCACCTGGTGAAGCAGGGTCGTGATCGCAGACGTGTAGAACTGCACAGGGACTTTACTGTGGCCTCACCTGCTGAGTTCGTCACCCGCTTCGGAGGAAACAAAGTCATCGAGAAGGTGCTCATCGCTAATAATGGCATTGCTGCTGTGAAGTGCATGCGCTCCATCCGGCGCTGGGCATACGAGATGTTTCGGAATGAGCGCGCCATCCGTTTCGTCGTCATGGTCACCCCTGAGGACCTGAAGGCAAATGCGGAGTACATAAAAATGGCTGATCATTATGTACCTGTTCCTGGAGGAACCAACAATAACAACTACGCCAATGTAGAGCTCATTTTGGACATTGCTAAGCGTATTCCAGTTCAGGCGGTGTGGGCTGGGTGGGGTCACGCGTCTGAAAACCCAAAACTCCCAGAACTCCTGCACAAGAACGGCATTGCCTTCATGGGTCCTCCCAGTCAGGCGATGTGGGCTCTGGGAGACAAGATTGCATCGTCCATTGTGGCTCAGACGGCTGGCATTCCCACTCTACCTTGGAGTGGAGCAGGGTTAACTGTCGAGTGGTCAGAAAATAACCAGAAGAAGCGAATCATCAACGTACCCAGTGAGCTCTACGAGCAGGGCTGCATCCAGGACGTGGAAGCCGGTCTTAAGGCTGCAGAGAAGGTGGGCTACCCGGTGATGATCAAGGCTTCGGAGGGTGGAGGAGGGAAAGGTATCCGCAAGGTCAACAGCGCCGATGACTTCCCCAACCTCTTCCGACAGGTGCAAACGGAGGTGCCCGGGTCACCCATCTTTGTCATGCGGCTTGCCAAGCACGCACGGCATCTGGAGGTGCAGATCCTGGCCGATCAGTACGGCAGCGCCATCTCCCTGTTCGGCAGAGACTGCTCTGTTCAGCGCAGACACCAGAAGATCATAGAGGAGGCGCCGGCCACCATCGCCACCTCCGACGTGTTCGAGAATATGGAAAGgTGTGCAGTGAAACTGGCTAAGATGGTGGGCTACGTCAGCGCAGGAACAGTTGAATATCTCTACAGTCAGGACGGCAGTTTTTACTTCCTGGAGCTGAACCCGCGTCTGCAGGTGGAACATCCCTGCACCGAGATGGTGGCTGATGTGAACCTACCCGCCGCCcagctgcagATTGCCATGGGCATCCCTCTGCACCGCATCAAGGACATCCGCATGCTGTACGGCGTGCACCCGTGGGGAGACTCCCCCATCAACTTCGAGGCGCTCTCTACCTCCCCCTCTCCACGAGGACATGTCATCGCAGCTCGCATCACCAGCGAGAACCCAGATGAGGGTTTTAAGCCGAGCTCGGGCACGGTGCAGGAGCTGAACTTTCGCAGCAATAAGAACGTGTGGGGTTACTTCAGCGTGGCCGCCGCTGGAGGGCTGCACGAGTTCGCCGACTCGCAGTTCGGTCACTGCTTCTCCTGGGGGGAAAACCGTGAAGAGGCCATCTCgaaCATGGTGGTGGCTCTGAAGGAGCTCTCGATCAGAGGAGACTTCAGGACCACAGTGGAGTATCTGATCAAACTGCTGGAGACTGAGAGCTTCCAGCACAACAGCATTGACACCGGCTGGCTGGACCGCCTCATCTCAGAGAAAATGCAGGCTGAGCGTCCAGACACCATTCTGGGGATAGTGAGCGGAGCACTGCATGTAGCGGATGTAAACTTCAGGAACAGTGTGTCCAACTTCCTGCATTCTCTCGAGAGGGGTCAGGTGTTGgcagcacacacactactgaacacagtTGATACCGAGCTCATCTACGAGGGCGTGAAATACGTCCTGAAGGTGACTCGCCAATCTCCGAACTCCTACGTGCTCATCATGAACAACTCGTCAGTGGAGGTGGACGTGCACCGGCTCAGCGATGGAGGCCTGCTGCTGTCCTACGACGGGAGCAGTTACACCACCTACATGAAGGAGGAGGTGGACCGGTATCGCATCACCATTGGTAATAAGACGTGTGTGTTTGAGAAGGAGAACGACCCGTCGCTGCTGCGCTCTCCGTCTGCTGGTAAACTCATCCAGTACACTGTGGAGGACGGGGGCCATGTGTTTGCGGGCCAGTGCTATGCTGAAATCGAGgtgatgaagatggtgatgacACTAACTGCAGCAGAATCGGGATGTATTCACTATGTAAAGCGAGCAGGGGCCGTGCTGGAGCCGGGCTGTGTTATAGCCAAACTGCAGCTGGACGATCCCAGCAGAGTGCAGCAGgCGGAACTGCATACCGGAGCATTGCCCAGTGTTCAGGCCGTGGCTCTCAGAGGGGAAAAGCTGCACCGAGTCTTCCACAACACTCTCGACCACCTGGTGCACATCATGAACGGCTACTGCCTGCCCGAGCCCTTCTTCAGTGccaaactGAAAGAGTGGGTGGAGCGGCTGATGAAAACCCTGCGGGATCCGTCACTGCCCCTGCTGGAGCTGCAGGACATCATGACGAGTGTTTCGGGTCGAATCCCTCCCACTGTAGAGAAAGCCATCAAGAAGGAGATGGCGCAGTACGCCAGTAACATCACCTCTGTGCTGTGCCAGTTCCCCAGccaacagATTGCCAACATCCTGGACAGCCACGCGGCCACGCTGAACAGGAAGTCGGAGCGCGAGGTCTTCTTCATGAACACTCAGAGCATTGTGCAGCTCGTCCAGAAATATCGCAGTGGTATCCGCGGCCACATGAGGGCAGTGGTGATGGATTTACTCAGGCAGTACCTGAAGGTGGAGGTGCAGTTTCAGCACGGTCATTATGACaagtgtgtgttcacactgcgTGAAGAGAACAAAGGCGACATGGCCAATGTGCTTAACTACATCTTCTCCCACGCCCAAGTCACCAAGAAGAACTCTCTGGTCACCATGCTGATCgATCAGTTGTGTGGGCGGGACCCCACGCTGACCGATGAGCTCATGGCCATCCTTACCGAGCTCACGCAGCTCAGCAAGACCACTAACGCCAAAGTGGCTCTGCGTGCCCGACAGGTGCTGATCGCATCTCACCTGCCTTCATACGAACTGCGCCACAACCAAGTGGAGTCCATCTTCCTGTCTGCCATCGACATGTACGGCCATCAGTTCTGCATCGAGAACCTGCAGAAACTCATTCTGTCCGAGACGTCCATCTTTGACGTGTTGCCCAActtcttctaccacagcaaccAGGTGGTCCGAATGGCCGCGCTAGAGgTGTATGTTCGGAGAGCATACATAGCATACGAGCTCAACAGCGTCCAGCACCGGCAGCTAAAGGACAACACGTGTATCGTGGAGTTTCAGTTCATGCTGCCCACATCGCATCCCAACAGAGGGAACATCCCCACTCTAAACAGAATGTCCTTCTCGTCCAACCTGAACCACTACGGCATGGTACACGTGGCCAGCGTGAGTGATGTTCTGCTGGACACCTCCTTCACACCGCCGTGTCAGCGCATGGGTGCCATGGTGTCCTTCCGCTCCTTCCAGGAAttcaccagaaaCATTAACGACATCCTGAGCTGTTTCTCGGACTCTCCGCCCACCAGCCCCTCCTTCCCCGAGGGGGGAAACCCTGTACTGTATGGAGAGGAAGACAACAAGAGCACACTAGATGAACCCATCCACATCCTGAACGTTGCTATTAAGACCGACAGCGACATCGATGATGACGGTTTGGCTGCCATGTTCCGGGAGTTCACCCAGTCCAAGAAATCGGTGCTGTTTGAGCACGGCATCCGGCGGCTCACCTTCCTCGTGGCGCAAAAGAGGGAGTTCCCGAAATTTTTCACCTTCCGTGCAAGAGACAAGTTTGAGGAGGACCGGATCTACAGGCACTTAGAGCCAGCGCTGGCCTTCCAGCTGGAACTGAACCGCATGCGTAACTTTGCGCTCACCGCCATCCCGTGTGCCAACCACAAGATGCACCTGTACCTGGGCGCCGCCCGCGTGGAGGTGGGCACCGAGGTCACGGACTATCGCTTCTTCGTGCGCGCCATCATCCGCCACTCAGACCTCGTCACCAAGGAAGCCTCTTTTGAGTACCTACACAACGAGGCTGAGAGACTGCTCTTGGAAGCCATGGACGAGCTGGAGGTGGCCTTCAACAACACCACAGTTCGCACAGACTGCAACCACATCTTCCTCAACTTCGTCCCCACCGTCATCATGGATCCCTCGAAGattGAGGAGTCAGTGCGCTCCATGGTGATGCGTTACGGCAGCCGTCTGTGGAAGCTGCGCGTGCTCCAGGCCGAGCTCAAGATCAACATCCGGCTCACGCCCACGGGCAAGCAGATCCCCATCCGCCTCTTCCTGACCAACGAGAGCGGCTACTACCTGGACATCAGTCTGTACAAGGAGGTCACGGACTCTCGCACGGGACAGGTGGGGCCCAATGACCGCCAGATCATGTTCCAGGCGTACGGAGACAAGCAGGGGCCTCTTCATGGCATGCTCATCAACACGCCGTACGTCACCAAAGACCTCCTGCAGTCCAAACGCTTCCAGGCCCAGAGCCTCGGCACCACCTACGTCTACGACCTGCCCGAGATGTTCAGACAGgcTCTGAAAAAGCTGTGGCAGTCCATGGACGCGTACGCTCACCTGCCCAAGTGCCCCCTGCCCTCTGAGCTCCTTACCTTCACTGAGCTGGTGCTGGACTCGCAGGGTCAGCTGGTGCAGATGAACCGCCTGCCTGGGGGCAATGAGATTGGCATGGTGGCATGGCGGATGACCCTCCGGACACCCGAGTACCCTGCAGGCCGTGAAATCATCGTGATCAGCAACGACATCACCCATAAGATCGGCTCTTTCGGGCCGCAGGAGGACGTCCTCTTCCAGCAGGCGTCGGAGATGGCGCGTGAGAGTGGCATTCCGCGCATCTACATCGCTGCCAACAGCGGCGCCCGCATCGGCCTGGCAGAGGAGATCAGACACATGTTCCACGTGGCCTGGCAGGACCCGGCCGACCCGTACAAGGGATTTAAGTACCTCTACCTCACACCTCAGGACTATAAGAAGGTCTCAGCACTGAACTCTGTGCACTGCGAGCACGTGGAGGACGAAGGGGAATCGAGGTATAAGATCACAGACATCATCGGAAAGGAGGAAGGCTTGGGTGTAGAGAACCTGAGAGGCTCAGGGATGATCGCTGGAGAATCATCACTCGCTTATGAAGAGATCATCACCATGAACCTGGTGACATGCAGGGCCATCGGGATCGGAGCATACCTGGTGCGTCTAGGCCAGAGGACCATCCAGGTGGAGAACTCGCACATCATCCTGACGGGAGCCGGAGCCCtcaacaaggtgcTTGGCCGGGAGGTTTACACGTCCAATAACCAGCTAGGAGGCGTGCAGATCATGCACAACAACGGTGTCACACACACCACGGTGTGCGACGACTTCGAGGGCGTTTACACGCTGCTGCAGTGGCTCTCCTACATGCCCAAGaacaCTTCGAGCCCCGTGCCGCTCCTGGCAGCCAAGGACCCCATCGACCGGCCGGTGGAGTTCGTACCCACCAAAGCGCCATACGACCCACGGTGGATGCTGGCAGGAAAAGCCAATCAGaACCCTAAAGGAGCGTGGATCAGTGGGTTCTTTGACTACGGCTCGTTTATGGAGATGATGCAGCCGTGGGCACAGAGTGTGGTGGTGGGCAGAGCTAGGCTGGGAGGTATCCCAGTCGGCGTGGTAGCCGTGGAGACGAGAACAGTCGAGCTGTCCATCCCAGCAGATCCAGCTAACCTGGACTCGGAAGCCAAAATCATCCAGCAGGCCGGACAGGTGTGGTTCCCCGACTCTGCGTTTAAGACGGCTCAAGCTATTAAGGACCTGAACCGCGAGGGACTTCCTCTCATGGTGTTCGCCAACTGGAGAGGCTTTTCTGGTGGCATGAAAGACATGTACGACCAGGTGCTGAAGTTCGGCGCATACATTGTGGATGGCCTGAGGGAGTACAGACAGCCGGTGCTGGTCTACATCCCACCTCAAGCCGAGCTCCGTGGAGGATCATGGGTAGTGATCGACCCCACAATCAACCCACGCCACATGGAGATGTATGCAGACAAGGACAGCCGTGGTGGCGTGTTGGAGCCGGAGGGGACGGTGGAGATCAAGTTTAGAAAGAAGGATCTGGTCAAGACCATGAGACGTGTCGATCCCGTTTACATGGGTCTGGCTGAGAGACTTGgcACGCCGGAGTTAAATGTATCAGAACGTAAGGAGCTGGAGAGCAAACTGAAGGAGCGAGAGGAGTTCCTGCTGCCCATCTACCATCAAGTAGCAGTGCAGTTCGCCGACCTGCACGACACGCCGGGCCGCATGCAGGAGAAAGGAGTCATTACTGATGTGTTGGAGTGGCGCACATCACGGCAGTTCTTTTACTGGCGTCTGCGGCGGCTCCTGCTGGAGGACACGGTGAAGAAGAAGATCCAGCAGGCTAACAGTGAGCTGACCGACGGCCAGGTGCAGGCCATGCTGCGGCGCTGGTTCGTCGAAGCCGAGGGAGCGGTGAAGgcgTATTTATGGGACAGTAATGAGGACGTGGTGGAGTGGTTGGAGAAGCAGCTGACGGAGGAGGAAGGAGCACGGTCTGTCATCGATGAGAACATTAAGTACATCCGCAGGGATCACCTTCTCAAACAGATCCGCAGTCTGGTTCAGGCGAACCCCGAGGTGGCCATGGACTCCATCGTGCACATGACGCAGCACATCTCCCCCACGCAGCGGGCCGAGGTGGTGCGCATCCTCTCCACCATGGACACGCCAAACTCCTCctgaacaccacacacacacacacacacacacacacacacacacacaccccaagaGGAGCCGACACACCAGCATGGTGGCTATGATTCTGGACTATAACTGTATTGTCTCTCACTCGTCTCAGTGGTAAAACTTCATGGTGAGAACTTCACTGTGTACATTTTTGGGAAGCGCAAGTCCAAATTTGTCGTAGAATTGCACTTGTTAATCACGTGTAAATTAAAAAACGAAACTAGACAAGCAGAGACCAAtgtgattacaaaaaaaaaaaaaaaaaaaagactgatacTGATTGTAGTCAAAGAGCAATGTGTCATATTGATGTTATAAaaggtgtttatttttgtctttaatgtTCCCTTAGGCTCGGTTTTTTTAATGCTCTGAACACAGCCGCTTCGGAAGCCGCAAATCCATTTCCACCaggtagaaaagaaaaacactgtataatatatttttcctttattttgggTGACAGCAGTATTCTGAAATTTTGACTTATTGTCTTAAAATTCTGACgacttatctcaaaattctTACTCAGTATCTCAAGATCTTGACTTATTGTTTTAGACTTCTCATTTACTCCCCCAACATTCTGACTCATTATCAAAAGATCTTGAATGCTTAtctcaaaatttcaaaatctaaAAAACTCTCATTTATTACCTCAATTCGGACTAATTATCTTGACTTATCTCAAAATTTTGCCTTCTCAAAATTCTGACTCATTATCACAAGCTCTTGATTTAGCTCCAAATTCTGACTCATTGTCTTAAAATTCTACGTCATTATCACAAGATCTgcttatctcaaaattctgatttattatctCAAGTCTGACTCATTGTCTCAAGATCTTGACTTACCTCAATATTTTGACTCGCTTTCTCAGAATTTTGACACTATAGGGCTATGCAAGTAGTGAAACAATCTTACAGTAATAAATGCAATCAAATAAGTCAAATTTGAGATAAATCAGAAATCTGAGATAAATCAgaatttgcaatttttttcttttctacctaGCTGAAATGGGCTTCCGTAGCGTCCTTTCTGTCTGAACGAGTGTGATCAGCCCAAACTGATCCCTGATGAGGCCAGaaaggtgcattttttttccttccaaaagagagcaaaaatgtTAAGCtataacactacacacactactcttTAAAGCCAGTACAATCATAACTCCGCTCACCTCCGCATGCACCTTAACCCCTTCCTTACATGTTTGTGTGGTTGACAAATACTTGTGTTACACGCACAATatggtgttgttttgtttttttttatcatgcgTTATGCAACTCTGTAATTTATTAACTGAAATTGtagtttggagaaaaaaaggttatttGTGCTAACAAACaatggtgaagtgtgtgtgaaactcaaaactatacatttaggaccaaactttttttttcttttttgctagAAAGAGCAAAGAGTAAAATGGTTCAAATAATACACTATGCTTTAGTAACTAAAAACAAGAGAATTCATAATAAAAAGGAGGCAGATGGAGGGATTCGGGGTGGAATTATAGGGTCATTAACGCTGCTGAAAGTGTTTGGGTTCTGTGAAAGGTCACGTTTTTGCACAGACCTGGATTAAAAGTGAATCCGTTGTAACGTTTGAGCGTCTGAATCACTACACTAACCGTGCTACCGATGAAACGATAGTGGCTCGAGGACTGACCCGAACAGAGGAGTGCGTGATTAAGGCGGCGAATGTGTTCCCACTGATTTTAACTCAATAAAATCAACTTCATCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU459403 lncRNA downstream 5121 15481343 ~ 15481777 (-) True G387585
TU459399 lncRNA downstream 10809 15475599 ~ 15476089 (-) True G387581
TU459389 lncRNA downstream 23123 15460919 ~ 15463775 (-) True G387573
TU459332 lncRNA downstream 79560 15405928 ~ 15407338 (-) True G387529
TU459314 lncRNA downstream 93814 15392875 ~ 15393084 (-) True G387514
TU459419 lncRNA upstream 43149 15570555 ~ 15570761 (-) True G387601
TU459607 lncRNA upstream 180014 15707420 ~ 15707623 (-) True G387752
TU459674 lncRNA upstream 334833 15862239 ~ 15863547 (-) True G387806
TU459678 lncRNA upstream 350486 15877892 ~ 15881563 (-) True G387809
TU459690 lncRNA upstream 354932 15882338 ~ 15884210 (-) False gltpd2
XM_034300579.1 mRNA downstream 81421 15396421 ~ 15405477 (-) True mks1
XM_026921851.2 mRNA downstream 137692 15346565 ~ 15349206 (-) True cryabb
XM_026921850.2 mRNA downstream 147016 15331238 ~ 15339882 (-) True bicdl2
XM_026922286.2 mRNA downstream 173078 15311085 ~ 15313820 (-) True ufc1
XM_034300758.1 mRNA downstream 181024 15299475 ~ 15305874 (-) True fdxacb1
XM_026921744.2 mRNA upstream 31913 15559319 ~ 15567411 (-) True tbx2a
XM_026921806.2 mRNA upstream 159244 15686650 ~ 15692290 (-) True LOC113531228
XM_034300554.1 mRNA upstream 168064 15695470 ~ 15704795 (-) True LOC113531182
XM_034300549.1 mRNA upstream 198385 15725791 ~ 15743549 (-) False LOC113531247
XM_034300547.1 mRNA upstream 198385 15725791 ~ 15743548 (-) True LOC113531247
TU459046 other downstream 563514 14916662 ~ 14923384 (-) True ccdc84
XR_003403286.1 other downstream 1571401 13915364 ~ 13915497 (-) True LOC113531684
XR_003403280.1 other downstream 1673569 13813233 ~ 13813329 (-) True LOC113531678
XR_003403212.2 other downstream 3788354 11691234 ~ 11698544 (-) False LOC113531030
XR_004577404.1 other downstream 3859376 11621662 ~ 11627522 (-) False map1b
XR_003403223.2 other upstream 850179 16377585 ~ 16380787 (-) False LOC113531235
trnam-cau_50 other upstream 903986 16431392 ~ 16431464 (-) True trnam-cau_50
trnam-cau_51 other upstream 907792 16435198 ~ 16435270 (-) True trnam-cau_51
TU460427 other upstream 1438882 16966288 ~ 16970026 (-) False crx
LOC117596251 other upstream 1528177 17055583 ~ 17057882 (-) True LOC117596251

Expression Profile