RNA id: TCONS_00043222


Basic Information

Item Value
RNA id TCONS_00043222
length 1519
RNA type mRNA
GC content 0.43
exon number 7
gene id XLOC_021792
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 31596194 ~ 31605592 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCGCTATTTTCCTCCCAACCGCATCGAGGCGCTTATGTGCGTTTGACCGGACAGTTTCTCATCTCGCGCAGGAACCGAGGCATCCTTGACAACAATCGCCGGTGGTCTGTTGTTGGCGTCTTAACGCTTTTGTTTACTTTCCTTGATCTTCACAACGTTCATTTTATTCGGATATGTGTATTTGTTAATCTTAAATCCCTTATTTTAACAACTCCTTACCACATCACATAATAAAATTACCTGGAACGGACTATTTGACGCCTCATATCAGTCAAGTTGTGTTTGTTACTTGACATGCATCTGTAAAGGGGTTGACAAGTTAAGCAAAACATCTAGAGCGGCTCCATGGAACCCAGTAACGATGTTGCGCTTGATATCATCGTTACTAATGTCGTATCAGTATTCAGAACCAGGTGCCATCTAAACCTGCGCACCATCGGCCTGGAAGGGACAAATGTCATCTACAAGCCTGAAGTGGGAAAAGTTCTGATGAAGCTGCGGAAACCACGTATCACTGCCTCTATATGGTCATCAGGGAAAATTATTTGCACTGGAGCAACAAGTGAGGAAGAAGCCAAACTAGGTGCTCGACGGTTGGCCCGCTGTCTACAGAAGATGGGATTTAAGGTGAGGTTCTCGGATTTTAAGGTTGTCAATGTGCTGGCAGTGTGCTCCATGCCTTTTCAGATCCGTCTCATTGAGTTCACTAAGAACAACCGGCCCATTGCCAGCTACGAGCCCGAGCTTCATCCTGCTGCGTCATACAGAATCAAAAACCTCAGGAGTACAGTGCAGGTGTTTTCCACAGGCAATATCACTGTTACAGGACCAAATGTACAGAGTGTGGCGTCTGCCGTGGAGGAGATTTATCCTCTGCTGTTTGAGTGTCGGAAAACACTGTCATAAACCACACGCACACACGTAGGCACCGGTTTGAAATGAAAAGCACCTTATCATTGAATGTTTTAAGGCTTGTAACTGTTGTACTGTATGTGTCTCCAAGGCAGCTTTTTTGCCATTTCACGTCCAAGCGGGTCTGGGTCGTGTGTTTTCAGAGTCATGCCTTTGAACGTTGACTTTGGTGTTTTCGGACCCCACGACGATTAATGACGACCTCTTAAAGCTCAGAAGAGGACCATTAGTGCATTGACATTGTGTTGCTGACATTGTGTAGTTTATAAACACTTGAATTAACTGTATTATAATGCATGGACACCAAAGTAAAAACTGGCAAGCagtgacattttaagaatcgCATTTTAATGAAACGTCTTGGAAGTTTTAGGTATGTTAATTCTAGTGACGTCTTTACGGCTCATTTAACGATACTATAAATCAGAAGCGAGAGGTTAAAGGGCAAACAAACACTTCACATTTCAACAGCAGGTGATGCATTTCTGGTTTACGCTGTGGACTGGAACACTCTGGATTGTGGAGGAGTCTTTGGTCCATATGTTTATGTAATATGTGAAaacttttgtattttataataaacaaataaaataacctCTATATTAA

Function

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0007275 multicellular organism development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0140223 general transcription initiation factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040520-2 Predicted to enable general transcription initiation factor activity. Involved in embryo development and transcription by RNA polymerase II. Predicted to be located in cytoplasm and nucleus. Orthologous to human TBPL1 (TATA-box binding protein like 1).

Ensembl:

ensembl_id ENSDART00000053534

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043214 lncRNA upstream 347496 31245431 ~ 31248945 (+) False XLOC_021787
TCONS_00043215 lncRNA upstream 347651 31245792 ~ 31248790 (+) True XLOC_021787
TCONS_00044850 lncRNA upstream 510490 31078564 ~ 31085951 (+) True XLOC_021785
TCONS_00043203 lncRNA upstream 823555 30764287 ~ 30772886 (+) True XLOC_021777
TCONS_00044849 lncRNA upstream 1163056 30402314 ~ 30433385 (+) True XLOC_021774
TCONS_00044851 lncRNA downstream 258432 31863739 ~ 31885913 (+) True XLOC_021795
TCONS_00043238 lncRNA downstream 423318 32028625 ~ 32038219 (+) False XLOC_021802
TCONS_00043241 lncRNA downstream 429434 32034741 ~ 32038219 (+) False XLOC_021802
TCONS_00043242 lncRNA downstream 431780 32037087 ~ 32038060 (+) False XLOC_021802
TCONS_00043249 lncRNA downstream 589101 32194408 ~ 32201494 (+) True XLOC_021805
TCONS_00043217 mRNA upstream 160519 31431956 ~ 31435922 (+) False XLOC_021789
TCONS_00043218 mRNA upstream 160519 31431978 ~ 31435922 (+) True XLOC_021789
TCONS_00043216 mRNA upstream 172712 31405497 ~ 31423729 (+) True XLOC_021788
TCONS_00043213 mRNA upstream 347489 31245395 ~ 31248952 (+) False XLOC_021787
TCONS_00043212 mRNA upstream 478070 31107685 ~ 31118371 (+) True XLOC_021786
TCONS_00043224 mRNA downstream 210116 31815423 ~ 31830043 (+) False XLOC_021794
TCONS_00043225 mRNA downstream 210185 31815492 ~ 31829033 (+) True XLOC_021794
TCONS_00043226 mRNA downstream 307575 31912882 ~ 31914996 (+) False XLOC_021796
TCONS_00043227 mRNA downstream 307985 31913292 ~ 31919155 (+) True XLOC_021796
TCONS_00043228 mRNA downstream 328276 31933583 ~ 31940912 (+) False XLOC_021797
TCONS_00043220 other upstream 162778 31433579 ~ 31433663 (+) True XLOC_021791
TCONS_00043219 other upstream 163093 31433273 ~ 31433348 (+) True XLOC_021790
TCONS_00043209 other upstream 616942 30979385 ~ 30979499 (+) True XLOC_021782
TCONS_00043184 other upstream 2007883 29588444 ~ 29588558 (+) True XLOC_021766
TCONS_00043179 other upstream 2233908 29357952 ~ 29362533 (+) False XLOC_021762
TCONS_00043223 other downstream 62122 31667429 ~ 31667543 (+) True XLOC_021793
TCONS_00043229 other downstream 328368 31933675 ~ 31940874 (+) True XLOC_021797
TCONS_00043240 other downstream 427458 32032765 ~ 32038219 (+) False XLOC_021802
TCONS_00043247 other downstream 495904 32101211 ~ 32107481 (+) False XLOC_021804
TCONS_00043259 other downstream 801888 32407195 ~ 32409927 (+) True XLOC_021810

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_13011184_13014251.mRNA True 2298 mRNA 0.38 6 CI01000001 13009419 ~ 13014262 (+)