RNA id: TCONS_00043227


Basic Information

Item Value
RNA id TCONS_00043227
length 1218
RNA type mRNA
GC content 0.46
exon number 7
gene id XLOC_021796
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 31912882 ~ 31919155 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGGCTCCAGTAGCCAATCAACTTGAAACATTTAGAAACGATGTCAAAGACGTTAGCCAATTATTTCGTTTGAACAGAAGGAGTGGGAAGTTtcgtatttgtttgtgtgtgctgttAAAAGTAACGGTAGCGATCTCCACAAAAAATGATGGACGCATTATCAGTCGTGACACAGCTACGGGACTTGGCATCAGAACCACAGAACCGGGAGGTTATTGTTCAGGACCAGGGTTGCCTTCCAGGATTAGTGCTGTTCCTGGACCACAAAGACCCTAAAGTGCTTTTTGCCACCCTTCAGGCCTTGCGGTACTTGGCTGAATCGCCCCGTAACATCAATACAATGAGAAATGAGCTTGGCATGATGGTCAGCCTGGAGTCATTGATAAAgagGACCGATTTGACAACTGATATTACAGACCTAGCAAAAGAGGTTCATGATTTGTTAAACGCTCAATCACAGAGGCCGGGTTGTCAGACTCCAGAgcaacagaagaagaagaagaacaaaccTCAGTTCTTCATTAACAGCACTAACAAGAAAGCCAAATCAGTTACCCTCCACATACAAGGCTTGGATGGGGCGGATCAGAGAGGTGTGTGTGAAGAGGCTCTTCTAAGGGTTAAAGGTGTAATCAGCTTCACGTTTCAGATGGCTCTGAAGAGATGCACTGTACGCATTCGTGCTGATCTGCCTACTGagagTCTGGCCACTGCCATTGCTTCCACAAAAGTGCTTTCGGCTAAGCAGGTTGTAAAAGATGAAAATGGAGAAGAGGTCCTCATTCCCCTCAGCACCTCTGGCTCAAAGGTAGAAGAAAACTCCCATCTGCCGGATTACCTGCCGGAGGAAGAAAGTCCAGAGAAAGAGCTGGACCGCGCGGTGTCTCGCACTGGTGCTAAACAAGACGCCGGCGGCAGCTGGTTGAACACCGCTGCCAGTTTCCTCACTAAAACCTTCTACTGGTGAAGACTTTACTTTCACAGACTGCTCCTGTCTGAGCTTGGACCTCAACTTTTAAAGGAAAACCGGGCCTAAAAAAGCAACAAGCACCAACTAGCACTAAGGAAAGTCTAGTCATTAAGCAACGTGCTTTTACAGGCTACAGAATGTGTCGTTCAGCTTATCAACATGTGTTTGTCTCATCACAGCTCTGTACTGAAAACTATTCATGTTGTACACTTTTGTATGTTAATGAAAagatctttctttttctctc

Function

GO:

id name namespace
GO:0030001 metal ion transport biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9819 Predicted to enable metal ion binding activity. Predicted to act upstream of or within metal ion transport. Predicted to be located in mitochondrial outer membrane. Is expressed in digestive system; pectoral fin musculature; proliferative region; and retina. Orthologous to human ARMC1 (armadillo repeat containing 1).

Ensembl:

ensembl_id ENSDART00000136910

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044851 lncRNA upstream 27379 31863739 ~ 31885913 (+) True XLOC_021795
TCONS_00043214 lncRNA upstream 664347 31245431 ~ 31248945 (+) False XLOC_021787
TCONS_00043215 lncRNA upstream 664502 31245792 ~ 31248790 (+) True XLOC_021787
TCONS_00044850 lncRNA upstream 827341 31078564 ~ 31085951 (+) True XLOC_021785
TCONS_00043203 lncRNA upstream 1140406 30764287 ~ 30772886 (+) True XLOC_021777
TCONS_00043238 lncRNA downstream 109470 32028625 ~ 32038219 (+) False XLOC_021802
TCONS_00043241 lncRNA downstream 115586 32034741 ~ 32038219 (+) False XLOC_021802
TCONS_00043242 lncRNA downstream 117932 32037087 ~ 32038060 (+) False XLOC_021802
TCONS_00043249 lncRNA downstream 275253 32194408 ~ 32201494 (+) True XLOC_021805
TCONS_00044852 lncRNA downstream 291103 32210258 ~ 32213360 (+) True XLOC_021806
TCONS_00043224 mRNA upstream 83249 31815423 ~ 31830043 (+) False XLOC_021794
TCONS_00043225 mRNA upstream 84259 31815492 ~ 31829033 (+) True XLOC_021794
TCONS_00043221 mRNA upstream 307700 31596194 ~ 31605592 (+) False XLOC_021792
TCONS_00043222 mRNA upstream 307985 31596441 ~ 31605307 (+) True XLOC_021792
TCONS_00043217 mRNA upstream 477370 31431956 ~ 31435922 (+) False XLOC_021789
TCONS_00043228 mRNA downstream 14428 31933583 ~ 31940912 (+) False XLOC_021797
TCONS_00043230 mRNA downstream 22885 31942040 ~ 31953643 (+) True XLOC_021798
TCONS_00043231 mRNA downstream 60447 31979602 ~ 32007818 (+) False XLOC_021799
TCONS_00043232 mRNA downstream 62641 31981796 ~ 32007370 (+) True XLOC_021799
TCONS_00043233 mRNA downstream 92613 32011768 ~ 32020198 (+) True XLOC_021800
TCONS_00043223 other upstream 245749 31667429 ~ 31667543 (+) True XLOC_021793
TCONS_00043220 other upstream 479629 31433579 ~ 31433663 (+) True XLOC_021791
TCONS_00043219 other upstream 479944 31433273 ~ 31433348 (+) True XLOC_021790
TCONS_00043209 other upstream 933793 30979385 ~ 30979499 (+) True XLOC_021782
TCONS_00043184 other upstream 2324734 29588444 ~ 29588558 (+) True XLOC_021766
TCONS_00043229 other downstream 14520 31933675 ~ 31940874 (+) True XLOC_021797
TCONS_00043240 other downstream 113610 32032765 ~ 32038219 (+) False XLOC_021802
TCONS_00043247 other downstream 182056 32101211 ~ 32107481 (+) False XLOC_021804
TCONS_00043259 other downstream 488040 32407195 ~ 32409927 (+) True XLOC_021810
TCONS_00043260 other downstream 493379 32412534 ~ 32421750 (+) True XLOC_021809

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_13220895_13223877.mRNA True 1441 mRNA 0.44 8 CI01000001 13220895 ~ 13224370 (+)