Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00043225 |
| length | 2085 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 15 |
| gene id | XLOC_021794 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 31815423 ~ 31830043 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0043009 | chordate embryonic development | biological_process |
| GO:0060216 | definitive hemopoiesis | biological_process |
| GO:0060271 | cilium assembly | biological_process |
| GO:0035701 | hematopoietic stem cell migration | biological_process |
| GO:0045658 | regulation of neutrophil differentiation | biological_process |
| GO:0001654 | eye development | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0000278 | mitotic cell cycle | biological_process |
| GO:0000785 | chromatin | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-991110-14 | Enables DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including definitive hemopoiesis; hematopoietic stem cell migration; and regulation of neutrophil differentiation. Located in chromatin. Is expressed in several structures, including head; hematopoietic cell; hematopoietic system; mesoderm; and vasculature. Orthologous to human MYB (MYB proto-oncogene, transcription factor). |
| ensembl_id | ENSDART00000075726 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00043214 | lncRNA | upstream | 566547 | 31245431 ~ 31248945 (+) | False | XLOC_021787 |
| TCONS_00043215 | lncRNA | upstream | 566702 | 31245792 ~ 31248790 (+) | True | XLOC_021787 |
| TCONS_00044850 | lncRNA | upstream | 729541 | 31078564 ~ 31085951 (+) | True | XLOC_021785 |
| TCONS_00043203 | lncRNA | upstream | 1042606 | 30764287 ~ 30772886 (+) | True | XLOC_021777 |
| TCONS_00044849 | lncRNA | upstream | 1382107 | 30402314 ~ 30433385 (+) | True | XLOC_021774 |
| TCONS_00044851 | lncRNA | downstream | 34706 | 31863739 ~ 31885913 (+) | True | XLOC_021795 |
| TCONS_00043238 | lncRNA | downstream | 199592 | 32028625 ~ 32038219 (+) | False | XLOC_021802 |
| TCONS_00043241 | lncRNA | downstream | 205708 | 32034741 ~ 32038219 (+) | False | XLOC_021802 |
| TCONS_00043242 | lncRNA | downstream | 208054 | 32037087 ~ 32038060 (+) | False | XLOC_021802 |
| TCONS_00043249 | lncRNA | downstream | 365375 | 32194408 ~ 32201494 (+) | True | XLOC_021805 |
| TCONS_00043221 | mRNA | upstream | 209900 | 31596194 ~ 31605592 (+) | False | XLOC_021792 |
| TCONS_00043222 | mRNA | upstream | 210185 | 31596441 ~ 31605307 (+) | True | XLOC_021792 |
| TCONS_00043217 | mRNA | upstream | 379570 | 31431956 ~ 31435922 (+) | False | XLOC_021789 |
| TCONS_00043218 | mRNA | upstream | 379570 | 31431978 ~ 31435922 (+) | True | XLOC_021789 |
| TCONS_00043216 | mRNA | upstream | 391763 | 31405497 ~ 31423729 (+) | True | XLOC_021788 |
| TCONS_00043226 | mRNA | downstream | 83849 | 31912882 ~ 31914996 (+) | False | XLOC_021796 |
| TCONS_00043227 | mRNA | downstream | 84259 | 31913292 ~ 31919155 (+) | True | XLOC_021796 |
| TCONS_00043228 | mRNA | downstream | 104550 | 31933583 ~ 31940912 (+) | False | XLOC_021797 |
| TCONS_00043230 | mRNA | downstream | 113007 | 31942040 ~ 31953643 (+) | True | XLOC_021798 |
| TCONS_00043231 | mRNA | downstream | 150569 | 31979602 ~ 32007818 (+) | False | XLOC_021799 |
| TCONS_00043223 | other | upstream | 147949 | 31667429 ~ 31667543 (+) | True | XLOC_021793 |
| TCONS_00043220 | other | upstream | 381829 | 31433579 ~ 31433663 (+) | True | XLOC_021791 |
| TCONS_00043219 | other | upstream | 382144 | 31433273 ~ 31433348 (+) | True | XLOC_021790 |
| TCONS_00043209 | other | upstream | 835993 | 30979385 ~ 30979499 (+) | True | XLOC_021782 |
| TCONS_00043184 | other | upstream | 2226934 | 29588444 ~ 29588558 (+) | True | XLOC_021766 |
| TCONS_00043229 | other | downstream | 104642 | 31933675 ~ 31940874 (+) | True | XLOC_021797 |
| TCONS_00043240 | other | downstream | 203732 | 32032765 ~ 32038219 (+) | False | XLOC_021802 |
| TCONS_00043247 | other | downstream | 272178 | 32101211 ~ 32107481 (+) | False | XLOC_021804 |
| TCONS_00043259 | other | downstream | 578162 | 32407195 ~ 32409927 (+) | True | XLOC_021810 |
| TCONS_00043260 | other | downstream | 583501 | 32412534 ~ 32421750 (+) | True | XLOC_021809 |
