RNA id: TCONS_00043224


Basic Information

Item Value
RNA id TCONS_00043224
length 3317
RNA type mRNA
GC content 0.44
exon number 16
gene id XLOC_021794
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 31815423 ~ 31830043 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAAGACAGCCCAGCTTTGTCTGATGGATCTGTTTACAATATCGCACACTCCACTAGAGAGCTTAATATCAGCACTTCCTCCTCGAAGAGGAGCTGACAGCACTCCACCTTAGCACACTTGAGCCGAGCGCACTCACCATCACATCTCTACCTTCCTCTCGAACAGCGGGATGGCGAGGCGGCACAGACACAGTGTTTACAGTAGCgacgaagatgatgatgatgtggaGATTTATGATCATGACTATGATGGTCCTCATGCCAAGACAGGAAAACGCCACCTCGGCAAGACACGCTGGACCCGTGAGGAGGATGAAAAGTTAAAGAGGCTGGTAGAGCATCATGGTTCTGAAGACTGGAAAGTCATCGCCAGCTTTCTACCGAATCGAACAGATGTTCAATGCCAGCATCGTTGGCAGAAAGTCCTCAACCCTGAACTCATTAAAGGACCATGGACTAAAGAAGAAGACCAACGGGTGATTGAGTTGGTGCAGAAGTACGGCCCCAAACGTTGGTCAGTAATCGCAAAGCATTTAAAGGGGCGAATCGGAAAGCAGTGTAGAGAGCGCTGGCACAACCATCTAAACCCTGAGGTGAAGAAGACGTCCTGGACTGAGGAAGAAGATCAAATCATTTACCAGGCGCACGAGAAACTTGGAAACCGATGGGCCGAGATTGCCAAGTTACTTCCGGGAAGAACCGATAATGCCATCAAGAATCACTGGAACTCCACTATGCGGCGGAAAGTGGAGCAAGAAGGTTATTTGCAGCACGCTGCTAAAGTCAGCCCAACTCCGCTAAACAACAGCTATTCTAAACCTCACCTCCTGAACTACAATCACACACCAAGCAACACATCCATGCCTGCCTCCTCCATGAGCAATCAGTATCCATACTACACTGAATCATCACGGGTGCCATTTCCACTTGCTCTCCAGTTAAACATCTTGAACTTTCCACAACATGGCACTGCTGCTATCCAGAGACACTACAGCGACGAGGACCCCGAAAAAGAAAAGAGGGTGAAAGAAATCGAGATGCTGTTGATGTCAACAGAAAACGAGCTGAAGGGACAACAGGCACTACCAATCTCCATGAACGGCTACGGTGGCTGGAACAGAGGCTCTTTGGCGGACAGTTCGGTTGGCATTGTTGTTTCAGTCCCGGCTCCATCCCTAGAGCAAGGATGCCTTCCTGAAGAAAGCGCACATGGCAACACAAACAGCCCAAATAACGACTCCAGCTCCACTTTACCAGAGTTTATCGATGCTATTGATTCGGCCCCATCAGTCTGGGCCAACAAACACCCTAAAACGGAGTGCCAAACCGGTCAGGGTTCGCCTGCAAACAACGGCAACAGAAGTGCCCCCACTTTTCTTTGCTCAACGCCCAAATATTCATCCGTCAGACACCTGCCTTTTTCTCCCACTCAGTTCTTTAATGCTTCAGTGAGTCCCGATTCAGACAGTCAAAATATACCAGTCACGCCATCGCCGGTCTGCTCCCAGAAAGCACTGCAGCAAGACCTTGCTCTTCGACCTCAGAAGGAAAATGAGCTGTTCCGAACTCCCAACCTGAGGCGTTCGATCATGGAGTGTTCTCCTCGCACACCCACTCCATTCAAATCCACACTGACAATGCAGGACAGCAAATACGGACCACTGAAGAggGTCCACAGTCCTTCGCTGGACTCTGGAGTGGTCGGCACGATTAAACAAGAGCCCCAGGAGTGTGAGATCAGTGTTGGAGGGGTGCATCTAGACCAGCCCCCTCTGAAAAAGATCAAACAGGAGGTGGAGTCAGTGTGTCTTCAGTGGGAGGGGCAAGATCTCCACACTCAGCTGTTCCCTTCTAATGGCCCCGCCCACGACATGCCTGATCTGCTGACTAGCTCTGTGCTGATGCTTCCCAACACAGAGAAGACTGAGGACGGACACAAAGCTGCCCAGTTGCCCCGCAGACCCATAGGAAGTCCTTTGCAGCAGTTGAACACATGGGAACAGGTGCTTTGTGGGAAGACGGAAGAGCAGACGATTCCCTCTGAAGCCACGCACAAATACCTCAGCAATTATTCTTCGCGAGCTCTGGTCATATGAACGAGAGACATAATGAGACAAAAATAGAAAGGGAAGGAGGAGGGAGAGTGAAAGAAGACAATCATTCTGAAAAGAAGTAAAAAGAGGAACAGTCCCTACACTCGTGGTACATTATTTGGGAGAGGCTGTAAGCCATTTTTGTTTGTAGACTGCACAGTCGATGTTTGGTCGCCAATGTTTAAGCTGTGCCATCATTCAAGGAACCAAAGacattgtgttttttatatacatatatatatatatatgttttgttttgttatttctacaTTTCTGATtggaatttaataatattgtattatatatgttGTATTATACATGGGAAATAATTGTTTATGTGGGTTCTAATTTTATGGATTTTAATATAAGGAACAATTTgcagtaatttattattattttgtattaagaataataattaactaACTATGACGGGCGCCTTTGCCAGTGTTTGCCCCCAGTATTGCTCACTTTTTTATTCGCTAAATGTGTGTTAATTGTAAGGAGCGCATGTCCTCCTAGCATTATCCGAGTCTTACACCCAAAACCAGACAAAGAGTTGTTCTGGGTGACCAACAAAACTGCCCTTGTATGTATTTCAGACTTATAGCACTGCTGTGTATTTCTGGCTAAAACAAACTGTGCCCGATGCCTACAAAATTAGGCCAGTTTGTGAATTCAACTCAAAATTTGAAGTCATATATCTAGTGTACTCTGCCAGTTTAGTAGTGTTGCCATTTCAAAAGCTTCAAGATGGAAACCACaacgttcatttttgtattagCACTATTTCAGGTTTTAGATCAACTCTTGCAGGAATTTCAACAGAacaaagtgtttgtttgtttttgtatttgcttCAAAGGTTTACCGAACATTTTCAAATCAAGGTCCAAAGTTGCCTTCGAGATGATATAcaacatttctttatgttttcaTAAACACTTTTTTGTATGACGATTTGTAATCAAATTTACCTTGGTATTTCTAGTTTTTAAACACTGAAATGATTGTTGCTTTTATACGTAGTTGGCTTGTTTTTTGATATTACAATCAGCCTTTTTTGATACTAAGATCCAATCAAAAGCATTGAGGAATAACTTTTTGTTATTCGCTGCCTTTTTGTATTAGCTTCAAGTACAAACACTTTTTATACACTGATTTTGAACTTTTCATACGTTTTTTATACAAACTGCCTTGTAAATAAAgtgtgtttttgagaaaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043009 chordate embryonic development biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0060271 cilium assembly biological_process
GO:0035701 hematopoietic stem cell migration biological_process
GO:0045658 regulation of neutrophil differentiation biological_process
GO:0001654 eye development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0005515 protein binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-991110-14 Enables DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including definitive hemopoiesis; hematopoietic stem cell migration; and regulation of neutrophil differentiation. Located in chromatin. Is expressed in several structures, including head; hematopoietic cell; hematopoietic system; mesoderm; and vasculature. Orthologous to human MYB (MYB proto-oncogene, transcription factor).

Ensembl:

ensembl_id ENSDART00000075730

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043214 lncRNA upstream 566478 31245431 ~ 31248945 (+) False XLOC_021787
TCONS_00043215 lncRNA upstream 566633 31245792 ~ 31248790 (+) True XLOC_021787
TCONS_00044850 lncRNA upstream 729472 31078564 ~ 31085951 (+) True XLOC_021785
TCONS_00043203 lncRNA upstream 1042537 30764287 ~ 30772886 (+) True XLOC_021777
TCONS_00044849 lncRNA upstream 1382038 30402314 ~ 30433385 (+) True XLOC_021774
TCONS_00044851 lncRNA downstream 33696 31863739 ~ 31885913 (+) True XLOC_021795
TCONS_00043238 lncRNA downstream 198582 32028625 ~ 32038219 (+) False XLOC_021802
TCONS_00043241 lncRNA downstream 204698 32034741 ~ 32038219 (+) False XLOC_021802
TCONS_00043242 lncRNA downstream 207044 32037087 ~ 32038060 (+) False XLOC_021802
TCONS_00043249 lncRNA downstream 364365 32194408 ~ 32201494 (+) True XLOC_021805
TCONS_00043221 mRNA upstream 209831 31596194 ~ 31605592 (+) False XLOC_021792
TCONS_00043222 mRNA upstream 210116 31596441 ~ 31605307 (+) True XLOC_021792
TCONS_00043217 mRNA upstream 379501 31431956 ~ 31435922 (+) False XLOC_021789
TCONS_00043218 mRNA upstream 379501 31431978 ~ 31435922 (+) True XLOC_021789
TCONS_00043216 mRNA upstream 391694 31405497 ~ 31423729 (+) True XLOC_021788
TCONS_00043226 mRNA downstream 82839 31912882 ~ 31914996 (+) False XLOC_021796
TCONS_00043227 mRNA downstream 83249 31913292 ~ 31919155 (+) True XLOC_021796
TCONS_00043228 mRNA downstream 103540 31933583 ~ 31940912 (+) False XLOC_021797
TCONS_00043230 mRNA downstream 111997 31942040 ~ 31953643 (+) True XLOC_021798
TCONS_00043231 mRNA downstream 149559 31979602 ~ 32007818 (+) False XLOC_021799
TCONS_00043223 other upstream 147880 31667429 ~ 31667543 (+) True XLOC_021793
TCONS_00043220 other upstream 381760 31433579 ~ 31433663 (+) True XLOC_021791
TCONS_00043219 other upstream 382075 31433273 ~ 31433348 (+) True XLOC_021790
TCONS_00043209 other upstream 835924 30979385 ~ 30979499 (+) True XLOC_021782
TCONS_00043184 other upstream 2226865 29588444 ~ 29588558 (+) True XLOC_021766
TCONS_00043229 other downstream 103632 31933675 ~ 31940874 (+) True XLOC_021797
TCONS_00043240 other downstream 202722 32032765 ~ 32038219 (+) False XLOC_021802
TCONS_00043247 other downstream 271168 32101211 ~ 32107481 (+) False XLOC_021804
TCONS_00043259 other downstream 577152 32407195 ~ 32409927 (+) True XLOC_021810
TCONS_00043260 other downstream 582491 32412534 ~ 32421750 (+) True XLOC_021809

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_13160253_13167224.mRNA True 3196 mRNA 0.44 15 CI01000001 13160253 ~ 13168505 (+)