RNA id: TCONS_00059547


Basic Information

Item Value
RNA id TCONS_00059547
length 1746
RNA type mRNA
GC content 0.49
exon number 1
gene id XLOC_030484
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 56023186 ~ 56027776 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGACATTGCATGAAGATTGGGATTGGACTTTTCCAGATTATGATTGCTGCATCTACCCTGGAGATCGGAGCATATGATTTGGAGCATGGCCGTCCGGGGAAATGCGAACCCATCACCATTCCCATGTGCCAGGGAATTGGCTACAACATGACACGGATGCCTAACCTGTTGAATTATGAAAGTCAAGAGGAAGCAAGCATAAAGCTGAATGAATTCGCTCCTCTGGTGAAGTACGGATGTGACATCCATCTGCAATTTTTCCTGTGCTCATTATATGTGCCAATGTGTGCTGAACAAGTGTCCGCCTCTATTCCAGCATGCCGTCCTATGTGTGAACAGGCACGACAAAGATGTTCACCCATAATGGAACAATTTAGTTTCAGTTGGCCGGACTCATTGGATTGCTCAAAACTCCCGACCAACAATGACCCAAATGCTCTGTGCATCGAAGCTCCAGAAAATGACACTCAACCTGAGACAAAAAAAGGTGAGGGCATGTTGCCAGTACCTCCAAGGTCCAGGCAACCCACAACAGTTAGTGGACGCATCTCAAGCATCTCACAGTCCTGTGAAAACCCAGAGAAGTTCCAGTATGTGGACAAGAGCGAGTCCTGCGCGCCTCGTTGCACTCCTACAGTGGATGTCTACTGGTCGAGGCAAGATAAGGACTTTGCATTCATTTGGATGGTCGTGTGGTCAacgctttgttttgtttctacaGCATTCACAGTTCTAACCTTTCTCCTTGACCCCCAACGTTTTCAGTACCCCGAGCGTCCAATCATCTTCCTCTCCATGTGTTACAACATCTACTCAGTGGCCTTCATCATCCGTTCAGTGGCTGGGGCTGAGAATATCGCATGTGATCGAGAAAACGGAGAGCTCTACATTATACGCGAAGGTCTAGAAAGCACAGGCTGCACCATAGTCTTCCTCATCCTTTATTACTTTGGGATGGCCAGCTCCATCTGGTGGGTGATCCTCACCCTCACCTGGTTTCTCGCAGCGGGACGAAAATGGGGCCATGAGGCCATCGAAGCACACAGCAGCTACTTCCATATGGCCGCCTGGGGTATTCCTGCAGTGAAGACCATAGTCATCCTCACTATGAGAAAGGTGGCTGGGGATGAGTTGACAGGATTGTGTTACGTGGGAAGCATGGACAGTAGCGCTCTCACTGGCTTTGTGCTGATCCCTCTTTCTTGCTATCTCATCGTCGGGACGTCGTTCATCCTCACGGGTTTCGTGGCGCTCTTCCACATTCGCAAAATTATGAAAACCGGTGGCACCAACACTGAAAAGCTGGAAAAGCTCATGGTTAAGATCGGAGTCTTTTCCATTCTCTACACAGTTCCTGCGACTATTGTGATCATATGCTATttctatgaaagactcaatatggAATACTGGAAGTTTAGAGCTCTGGAGAACAAGTGCGTGTCCTTTCCTGGCCGCAGGAGCGATGATTGCTCCCTGGACTCATCGGTTCCTACAGTAGCTGTGTTCATGCTGAAAATATTTATGTCGCTAGTGGTGGGCATCACCAGCGGGGTTTGGGTATGGAGCTCAAAGACACTTCAGACCTGGCAGGGCTTGTACAACAGGAGGTTGGGTGTGCAGACCAGCCATAAGCCCTGTTCCAGCGTCAGCTGCAGCAACTCCCACTGCCATTACAAAGCACCGGCTGTGACAATTCACATGAACAAAACGGACGCCTATACAGACAGTCCCACACATGTTTAA

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0035567 non-canonical Wnt signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0017147 Wnt-protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060531-77 Predicted to enable Wnt-activated receptor activity and Wnt-protein binding activity. Predicted to be involved in canonical Wnt signaling pathway and non-canonical Wnt signaling pathway. Predicted to act upstream of or within cell surface receptor signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Is expressed in central nervous system. Orthologous to human FZD9 (frizzled class receptor 9).

Ensembl:

ensembl_id ENSDART00000050970

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00059543 lncRNA upstream 79350 55945798 ~ 55946681 (+) True XLOC_030482
TCONS_00061469 lncRNA upstream 119318 55905187 ~ 55906713 (+) False XLOC_030481
TCONS_00061467 lncRNA upstream 119321 55905133 ~ 55906710 (+) False XLOC_030481
TCONS_00061471 lncRNA downstream 66154 56093930 ~ 56094196 (+) True XLOC_030485
TCONS_00061795 lncRNA downstream 157089 56184865 ~ 56185944 (+) True XLOC_030487
TCONS_00059551 lncRNA downstream 230655 56258431 ~ 56259830 (+) True XLOC_030490
TCONS_00061796 lncRNA downstream 405876 56433652 ~ 56438669 (+) True XLOC_030493
TCONS_00061797 lncRNA downstream 446834 56474610 ~ 56508203 (+) False XLOC_030494
TCONS_00059544 mRNA upstream 36258 55984270 ~ 55989773 (+) False XLOC_030483
TCONS_00059545 mRNA upstream 38093 55984363 ~ 55987938 (+) True XLOC_030483
TCONS_00059542 mRNA upstream 73903 55934129 ~ 55952128 (+) False XLOC_030482
TCONS_00059540 mRNA upstream 336375 55626693 ~ 55689656 (+) True XLOC_030478
TCONS_00059539 mRNA upstream 336422 55626693 ~ 55689609 (+) False XLOC_030478
TCONS_00059548 mRNA downstream 92199 56119975 ~ 56125769 (+) True XLOC_030486
TCONS_00059552 mRNA downstream 240660 56268436 ~ 56274174 (+) True XLOC_030491
TCONS_00059553 mRNA downstream 250090 56277866 ~ 56306081 (+) False XLOC_030492
TCONS_00059554 mRNA downstream 250094 56277870 ~ 56305724 (+) False XLOC_030492
TCONS_00059555 mRNA downstream 250103 56277879 ~ 56280674 (+) False XLOC_030492
TCONS_00059541 other upstream 354449 55671466 ~ 55671582 (+) True XLOC_030479
TCONS_00059516 other upstream 1917517 54106010 ~ 54108514 (+) True XLOC_030460
TCONS_00059514 other upstream 2162797 53824969 ~ 53863234 (+) True XLOC_030458
TCONS_00059512 other upstream 2268526 53700294 ~ 53757505 (+) True XLOC_030457
TCONS_00059510 other upstream 2418328 53581489 ~ 53607703 (+) False XLOC_030457
TCONS_00059549 other downstream 218960 56246736 ~ 56248735 (+) True XLOC_030488
TCONS_00059550 other downstream 228412 56256188 ~ 56258166 (+) True XLOC_030489
TCONS_00059556 other downstream 262359 56290135 ~ 56305811 (+) True XLOC_030492
TCONS_00059578 other downstream 2009996 58037772 ~ 58037886 (+) True XLOC_030510
TCONS_00059579 other downstream 2184385 58212161 ~ 58212284 (+) True XLOC_030511

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000059_01293199_01294944.mRNA True 2429 mRNA 0.45 1 CI01000059 1292871 ~ 1295299 (+)
bowfin (Amia calva) AMCG00016392 True 3400 mRNA 0.48 2 CM030122.1 18086767 ~ 18091557 (-)