RNA id: TCONS_00069717


Basic Information

Item Value
RNA id TCONS_00069717
length 2933
RNA type mRNA
GC content 0.45
exon number 22
gene id XLOC_035549
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 17838924 ~ 17917668 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGACCCGACCGAAAGGAGGATACTACAAAGGAGAATTGGGGGAGCCACACAAATTTGACCCCACATTCAGAGGACCTGTTCATAAAAGGGGCTGCACAGACGTGCTTTGCTGCGTGATCTTCGTCATCGTCATCCTCGGCTACATCGTTCTGGGAACAGTGGCATGGATGCATGGAGACCCCCGGAAAGTGGTCTACCCAACAGACAGCTATGGGCAATTCTGTGGTCAGCAGGAGACTCCTAATGCAAATAAAGCCATATTATTTTACTTCAATATTTTACAATGTGCCAATCCTTCAGTCCTCATTAACCTCCAGTGCCCTACAACTCAGCTGTGTGTATCCAAGTGCCCAGACAGATTTGCCACATACATTGACATGCAATACAGCTACAGACGCAATAAGGGCTCCTGGGAATACTACAAGCAATTCTGCAAGCCGGGCTTCAACAACCCTGATAAGCCGATTTCTCAGGTACTCCGGGATGAAGATTGTCCCTCAATGATTGTGCCAAGCAGACCATTTCTCCAGAGGTGCTTTCCTGATTTCATCACCAGAAATGGGACGTTAACTGTTGCCAACCAAACAAGCTTCAAAGATGGACATGGTAAAATCAGAAGCGTCGTCGACCTAAGAGATGCAGCCAATGGCATCACCAGCTTGTTGGATGCGAAGGAAGTGGGCACCAAGATCTTTGAGGATTACGCCAGCTCGTGGTTTTGGATTCTAATCGGTCTGGTGATCAGTATGCTGGTCAGCCTGGTCTTTATTCTGCTGCTGAGGTTTACCGCTGGCGTTCTCTTCTGGTTGGTTATCTTTGGAGTCATCGCGGCTGTGGGATATGGAATATGGCATTGTTACTGGGAGTACAGTTCACTTAAGGGAAAACCGGATTCAGATGTCACCATCTCAGACATTGGATTCCAGACTGACTTCCGGGTTTACCTGCAGTTGAGCCAAACCTGGCTTATATTCATGACCTCCTTGGCTGTCATTGAAGCCATCATCATCTTAGTGCTGATATTCCTAAGGAACAGAGTTCGCATTGCCATTGCTCTTCTGAAAGAGGGCAGCAAGGCGATTGGCTGCATCATGTCAACACTCTTCTATCCCATCATCACCTTCCTGCTGCTGGCTCTCTGTATTGCATACTGGGCTGTTACAGCTGTTTTCCTGGCATCGTCTGGTGAGGCCGTATACAAAGTAATGTCAACACTACCCGACTGCAAATACACAAACCTCACCTGTGACCCAGAGACCTTCAGCCAATCAAATGTGACTAAACTGTGTCCGGGCTCTCAATGCACATTTGCTTTCTATGGTGGGGAGAGTCTGTACCACCGCTACATCTTTGTGCTCCAGCTCTGCAATTTGCTGGTCTTCCTGTGGCTGGTGAATTTCACCATCGCTCTTGGCCAGTGCACCCTTGCTGGGGCTTTTGCCGCATATTACTGGGCCTTGAGGAAGCCGGCAGACATCCCACCATGCCCTTTGGCTTCATCATTTGGCAGGGCTTTAAGGTATCACACAGGCTCTCTGGCATTTGGAGCTTTGATTCTGTCCATTGTCCAGTTCATCCGGATTATTCTGGAGTATCTCGACCACAAACTGAAAGGTGCTCACAACGCATTCACACGCTTCCTGCTGTGCTGTCTCAAATGCTGTTTCTGGTGCCTCGAGCACTTCATCAAGTTCATGAACAGGAATGCTTACATTATGatttcaatATATGGGAAGAATTTCTGTACTTCAGCGAGAGATGCTTTCTTCCTGTTAATGAGGAATGTCATGAGAGTTGCTGTTCTGGACAAGGTGACTGATTTCCTGCTGTTTTTGGGCAAACTGTTGATCTCAGGGAGTGTGGGTGTCCTTGCATTCTTTTTCTTCACCCGCCAAATACCAGTAATCCAGGAAGAAGTGCCGTCATTAAATTACTATTGGGTCCCTCTACTGACTGTGATATTTGGATCATATATGATTGCGCATGGATTCTTTAACGTCTATGCCATGTGTGTCGATACACTGTTCCTCTGCTTCTTGCTTGATCTGGAGAAGAACGACGGTTCAGCAACCCGTCCGTATTACATGTGCAGCAGCCTGAGAGCCATTCTCAACAAGAAGAACCAGAAGAGACCCAAGGAGACCAAGAGAGGTAGAAAACAAAAGAAGGAGCAACCAAAAAGCAGACACTGACATGAAAAACAGACACTGCCGATGCTCAGACTGTGTGTGTTTCCAGATTATTCGCATCTGTGAGACTGACAGATTTATGAAGGATTATGTACGCACTGTAGGTCgtattttttagttttgtttctttgtttgtttgtctgaaaCCCAAAACTATAAGATTCTGTTTGTTTATTGGGAAATTAAATACACTTACAATTAACACAAAAACATTAGCTACATGAACTTAAATTAGGGCCACTTTCCAACAACCTTAGGGGCTGATCACACCAAACGTGCTTTTTGCGCTGAGAGGTGCATTTTTTGAATAATTTACTAATGCCGTAAGTGTTTTGTGCGCTGCTTATGCTCCCTGCCTGCTGGTCCTCGCGTTTTCGCCGTTGCGTGCTGTGCACTCACAGTtggaaaaaaagtcaactctgagcggaaaaagcATGTTACGTCAGTCGCGTCTTTTTAAttttccaatcaaatgaaagtagaggcggggtttccgttgaggtgatAGCAGTTTTTGTGTTGTCAAGGTAACTATGGGGACATTGACGATAGAGGAGAGACTAGCAGTCGCTGTTTTTGAGTTATCTGGAGCTGTATGactttaggcaaggcaagtttatttatatagcacatttcatacacagtgacaATTCaatgtgctttacataaacaggaataaaagagacaagtatgaataaaataaaaacaattaatacaaAAGATGAAAACAGCATAAAGACAGT

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-4 Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human SLC44A5 (solute carrier family 44 member 5).

Ensembl:

ensembl_id ENSDART00000080079

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072174 lncRNA upstream 462145 17368041 ~ 17407080 (+) True XLOC_035546
TCONS_00072173 lncRNA upstream 742886 17087009 ~ 17126339 (+) False XLOC_035542
TCONS_00072172 lncRNA upstream 771772 17086991 ~ 17097453 (+) False XLOC_035542
TCONS_00072171 lncRNA upstream 809848 17055879 ~ 17059377 (+) True XLOC_035539
TCONS_00069700 lncRNA upstream 1105594 16758464 ~ 16763631 (+) True XLOC_035536
TCONS_00072175 lncRNA downstream 45161 17962829 ~ 17968234 (+) True XLOC_035551
TCONS_00071922 lncRNA downstream 493316 18410984 ~ 18412028 (+) True XLOC_035556
TCONS_00071923 lncRNA downstream 792306 18709974 ~ 18733594 (+) True XLOC_035563
TCONS_00072176 lncRNA downstream 1310167 19227835 ~ 19232675 (+) True XLOC_035566
TCONS_00069750 lncRNA downstream 1596689 19514357 ~ 19516262 (+) False XLOC_035570
TCONS_00069714 mRNA upstream 84502 17775247 ~ 17784723 (+) True XLOC_035548
TCONS_00069713 mRNA upstream 334194 17529151 ~ 17535031 (+) True XLOC_035547
TCONS_00069711 mRNA upstream 676184 17184602 ~ 17193041 (+) False XLOC_035545
TCONS_00069712 mRNA upstream 676184 17184610 ~ 17193041 (+) True XLOC_035545
TCONS_00069710 mRNA upstream 695778 17168114 ~ 17173447 (+) True XLOC_035544
TCONS_00069719 mRNA downstream 15807 17933475 ~ 17947205 (+) True XLOC_035550
TCONS_00069720 mRNA downstream 69547 17987215 ~ 17990577 (+) False XLOC_035552
TCONS_00069721 mRNA downstream 70110 17987778 ~ 17988853 (+) True XLOC_035552
TCONS_00069722 mRNA downstream 72527 17990195 ~ 17992600 (+) True XLOC_035553
TCONS_00069723 mRNA downstream 92900 18010568 ~ 18036613 (+) False XLOC_035554
TCONS_00069707 other upstream 772160 17087060 ~ 17097065 (+) True XLOC_035542
TCONS_00069704 other upstream 795854 17069577 ~ 17073371 (+) False XLOC_035540
TCONS_00069701 other upstream 1058972 16772174 ~ 16810253 (+) True XLOC_035537
TCONS_00069690 other upstream 1180763 16676937 ~ 16688462 (+) False XLOC_035532
TCONS_00069685 other upstream 1789432 16023470 ~ 16079793 (+) False XLOC_035526
TCONS_00069740 other downstream 752569 18670237 ~ 18670362 (+) True XLOC_035562
TCONS_00069742 other downstream 1105593 19023261 ~ 19023377 (+) True XLOC_035565
TCONS_00069748 other downstream 1586359 19504027 ~ 19509241 (+) True XLOC_035569
TCONS_00069759 other downstream 2034065 19951733 ~ 19952380 (+) False XLOC_035578
TCONS_00069760 other downstream 2034109 19951777 ~ 19952379 (+) True XLOC_035578

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_03961520_03974921.mRNA False 1550 mRNA 0.46 13 CI01000010 3961419 ~ 3974921 (-)