RNA id: XM_034313820.1


Basic Information

Item Value
RNA id XM_034313820.1
length 4323
RNA type mRNA
GC content 0.50
exon number 13
gene id mideasa
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 17092570 ~ 17113651 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTATCTGAAACCCGTGCAACCCGACTCTTAAGTCTCACGGAAGACATGCAAATATGAGCTGAAACTTTACACACGGGAAGTAGCTTTTAGGTTTCAGTAgtaagtttgtttgtttgtttgtttgtttgaagtCGAGTGTGCCCCTGAGGTAATAACACACGAGCTCGTCAAGGCAGAAATGCCGCGCGACGCAGCGGAATGCGCGACTTTGTGCAACTTTGTTTCCAGCTCGCGCCGCTCAGATGTTGACACATCGACGTCGTGAGACTTAACGACTTCCTATAGAGTCGCGGTCGATTGTGACCCGGCTGTGGGGCTGTAATAGTGAGCAGTGTGCAGCCGTGTGCATGCAAGAGAGTCGACTTTGCTCCGGGTTGGATCGGTTTTCTGCGTCACTCAGCCCTGTCACCCGAACCTGAAGACATAAACACCACCAGAAGGCAAGGCGACATTGCGGCGATAACAGAAATCTTGCCTGAGGGATGACAAACCGCTTAGCTGTTTACAGCATAACTAGTTTGGAGAAGAGGAGAACAGGCAAGGGAGGAAGTGCAATTCATGTTCTCTTCCCTCTTCTGCGTGGCGTCTACATACTAAGGCGCTCTGACGAAGGCAGTCAGACTTGTAGAgcagtggggttttttttcagttggtGTGTACTGATGATCATTTCTGCACACCCTTTTGTAATTTTGCAATCTCAACATGAGCCTCTCTCCTCATCAGAGAGGGAACGTTAATAATCTGGGCAAGCAGAATATTGAAGGCATCGAGGAACTGGCGCAACATTCAGGGGAGGTCTTCTACAACGCCGGGGGTCCGTCGTTAGAGCAAACGAACAGCAGTGCTGGAGGAAGGACGGACCCCAGTTTTGATCTCCAAAGCTCAGCTATTTTTAAACCTGACAAAGGCTATCAAGTATGGAGTCATTTTCAGCAATCAGGTCCAATGAAATGGGTGTCTCAAGAGCCAGTTCATTCCTCCACTTGGTTTCCAGGCCTACCAAATTCAACTAAACTGCCCCAGAACTTTGGACCTTCTCTGACTGGAATGGAGGATGCACGAGGACATCAAGCTTTACCCAAGACCAATCACGACCTGGACTCCTTGCAGCAAGAGAAAATGTCTGCAGGCTCCTCTGTGCCCTACGCCGAACCAACACAAGCTCTGGCACCAGGAATGGAATGGGACTCTCATGCTATGGCAGCCATGCATCATCCCCAGTTCCAGGCTCATCAGCATGGCCACAAGCCAGGAGACCCACAGTATCAGCCTCACGCCATGCGTCACTCCATGCCCGACTCTACTCTACAGCCCTTTCAGGTGGCGTTTGGACCTAACAAGCAACTTCAGACCTCGGGTTTCTTTCAGTCTTTCCAAGGAAACAGCGCACCACAGAATCTGGGTTACAGCGAACCACCAAAatcacaacagcagcagcagcaacagcagcagctcttgcagttacaacagcaacagcagcagatgCAGCAAATGttgcaacagcagcaacaacaacgaTTACTCCAAATTCAACAGCAGTACCAACATCAGCAGAAAATGCAGGAACAGCTGCAGCagatgcagcagcagcatcaacTGCACCAGATGCAAAACATGCTACAACCAGAATCATGTTCTTCACAGCCACTTCAGCAAGACCAGCGACTGGCCAGACCACCACAGCAACCAGACAACAGTCAAGTCAAAGCAAGTTCTTGTACGTTGCCTCATCAAAGACAGGATCCAAGTCCACAGTCACCAGTGAACAAAGATCCAGGTCTTGGTCAAGCAATTCAGGAGATGCAAGAAACCGAAGGCAAACCTGAGGCTCTCCCTCGGCGCTCCAGAAGGCTCTCGAAGGACGGCATCTCCCCTCCAGTCAACCCGCCAGCGAAGGAACCGGCCCGTAACGGAGGCATCGCTGGTGTTCCAGGACCCTCAGTAGGGGTTATCCATAGCAcacagagaaggaggaggacaTCCAAAGAGATCAACCTCGAGACTCTGGCGCAGAAGGCTTCGGAGATGGAGTTTTTGCCTGCAAAGCAGCGTGATGAGAGCACGTctagcagacagacaggaatgCCTCCTCTAGTGATCCCCGTGTCTGTACCTGTTCGGAAGAATCAGGTCCAGGTAGAGCAGACAGGCGGCTGGACGCGTGAGCAGAGGCTTCCTCCAGAGAGTACGCAACAGTCCGAGCACAAGCCCTCTGTTATCGTGACACGCCGCCGCTCATTAAGGGCTTCTGACAGTTTCAACCAGGAGGATGCAATGGAGGACGGAAGATCCCCGGACAAGATAAAGCGTCGCCCTAGACCCGAGCCCCTGGTCATCCCTCCACCCAGACCATGCACGTTCATCGCCCCCTCCGTCTACTCCAGCATCTCGCCCTTCCAGAGCCACCTGCGCTCCCCTATACGCCTGCTGGACAACCCTCTGACTCTGCCACCGTACACTCCTCCACCCATCCTGTCGCCTGTGCGCGAGGGCTCGGGACTTTACTTCTCTACATTCCTGTCCTCAATAGCAGCCGGGAATCAGGGCTTGCCTCCACCGCCAACCCCCAAAACCGCCTCCAGGAGCCTCCTGCGCTCAACCAGTTCTGATATTACTCCTCCAATGCTCCCTCTGATCGGAGAGGCCACCCCCGTCAGCTTAGAACCGCGAATAAACATCGGCTCTCAGTACCAGGCAGAGATTCCTGAGCTCCAGGTGCCATCGCTGGTTGAACAGGATCAGCACAAAGCTACTCTGGTGTGGCTCCCGCTGCCACAGGCGGAAACTTCCCCTTCCCAGGATGAGACAGTGGATAATCTGATGCACCTGGCCTGCTCCAGTGTGCTGCATGGAGGAGGAACCAACGTGGAGCTCATGCACCACTGCCTTCATGAGAACGGAGGTGATGTCATGAAAACTCTGGAAGTCTTGTTGCTGAAGAAACCTATTTTCCCCAAGGATCACCACCTTTCTAACTACCACTACGCAGGGTCAGACTGCTGGACTGTGGATGAAAAGCGCTACTTCAATAAAGGGATCTCTGCTTACAGGAAGGACTTCTTTTTAGTGCAGAAAGTGgtgcagAGTAAAACACTGGCACAGTGTGTGGAATTTTATTACACCTATAAGAAACAGGTGAAGGTCGGGCGCAGTGGGACGCTGATCTACGGCCCTCCGGATCCAGAAGAGCGCGTCCCTGAGATCCCACAGATCAAACAAGAGCAGCCGGAAGCAGTCGAGGAGAGCAAACACAAGGCAGAGCACGAAGACGCCGGCGCTGACCACCTCCGAAACGTGACAAAGACTCTTCAGGTCAGTGAGAATGAGGGGAAAGTGTTGGTGCTGAGCAACCCAAAGGTCATCTCTTTGGATAAGGTAACCGCACTGAGGCAGGAAACACGGACTCCTCCTTTCTTTGCTCCGAAACCACGTGAGAGTGCAGGGAGGAGAAGCACTCCGTCAAATGCACCTAAGAGTCAGGGAGAACCCGAGGGCGTATTTCCCTGCAAGAAGTGCAGCAGGGTGTTCTACAAAGTAAAAAGCCGCAGCGCGCACATGAAGAGCCACGCCGAGCAGGAGAAGAAAGCAGCGGCTCagcgacagagagaggaagaggagcggCTGGCGGCGTTGGCCAGGCTCAAGGCAGCAGAGACGGAGAGGTTTGAGGATGATAGCGAAGCTGAGGAGTACATGATCGAGCCAGACAATGAGAGAGACGATGACTGGCGatgagaatttttattttttttttccggaaGGGGCGACACTTATTTAGCcaaatcttttccaaatccagtggactgtttattacacacaataaCCAAAGGGATGGCGTGAATGTAATAttaggttttgttgtttttagggTGTTGTGATATGTAATACATGCTGTAACAACATAGCAATTTAACATGAATAATGTGTTCTCATTAAGAAGTCTGAATGTAGATTGAACACAGACTCCATGACCTCTGCTCACTGTCTATCATTTCCCTATAATATAGCAAATTTTAGAGCACCTTTTGTAATAATTTAGGGAATATTTTCTATGAATGTCTGATTTATATAACTTTACATAtattatgttaaataatatgtttttaatgtaactctttaaaattgattattaaaaaaaaggattgttCAGGCTAAAAGACAAATAAGAAATTTCAATCAAGGAAATTGTATTTTGTacaattgtattgtattatcaGCTCAAGGATACACTATTATTTTGATCTTTATTCCACAAAACTAAGGGTAATTTTCAATCGGATGTATTTTGTATATGAAAAGTATAAATTgtagaaaatata

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU351753 lncRNA downstream 10456 17081872 ~ 17082114 (-) True G297053
TU351752 lncRNA downstream 26142 17065682 ~ 17066428 (-) True G297052
TU351750 lncRNA downstream 28185 17064166 ~ 17064385 (-) True G297050
TU351749 lncRNA downstream 37567 17054364 ~ 17055003 (-) True G297049
TU351745 lncRNA downstream 41931 17050395 ~ 17050639 (-) True G297045
TU352043 lncRNA upstream 120326 17233977 ~ 17236111 (-) True gtf2h5
XR_003403302.2 lncRNA upstream 302315 17415966 ~ 17421452 (-) True LOC113531886
TU352197 lncRNA upstream 368673 17482324 ~ 17482887 (-) True G297442
TU352201 lncRNA upstream 392255 17505906 ~ 17506658 (-) False esr1
TU352232 lncRNA upstream 542574 17656225 ~ 17656811 (-) True G297465
XM_034313848.1 mRNA downstream 11761 17069425 ~ 17080809 (-) True laptm4a
XM_026923331.2 mRNA downstream 45739 17043166 ~ 17046831 (-) True ttc32
XM_026922729.2 mRNA downstream 51123 17030354 ~ 17041447 (-) True zpax1
XM_026923667.2 mRNA downstream 66397 17023135 ~ 17026173 (-) True mixl1
XM_034313672.1 mRNA downstream 100843 16990552 ~ 16991727 (-) True LOC113531763
XM_026923407.2 mRNA upstream 36137 17149788 ~ 17152955 (-) True churc1
XM_026923789.2 mRNA upstream 54536 17168187 ~ 17193647 (-) True capn3b
XM_026922841.2 mRNA upstream 102562 17216213 ~ 17232098 (-) True si:dkey-12h9.6
XM_026923294.2 mRNA upstream 121028 17234679 ~ 17236129 (-) False gtf2h5
XM_034313484.1 mRNA upstream 121028 17234679 ~ 17236013 (-) False gtf2h5
TU351727 other downstream 45760 17043313 ~ 17046810 (-) False ttc32
TU351456 other downstream 534643 16555103 ~ 16557927 (-) False G296802
TU351457 other downstream 534643 16555476 ~ 16557927 (-) True G296802
trnal-cag_16 other downstream 585657 16506831 ~ 16506913 (-) True trnal-cag_16
XR_003403300.2 other downstream 949966 16134167 ~ 16142604 (-) False pln
TU352481 other upstream 593635 17707286 ~ 17715244 (-) False acot20
XR_003404857.2 other upstream 961711 18075362 ~ 18105993 (-) False dpf3
TU353207 other upstream 1964353 19078004 ~ 19083465 (-) False ubr7
LOC113547697 other upstream 2152176 19265827 ~ 19267009 (-) True LOC113547697
TU353415 other upstream 2277348 19390999 ~ 19391487 (-) False LOC113525604

Expression Profile