RNA id: TCONS_00007870


Basic Information

Item Value
RNA id TCONS_00007870
length 3656
RNA type mRNA
GC content 0.50
exon number 20
gene id XLOC_004122
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 22920587 ~ 23080970 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCTCTGTGGTGCGTCTTGAGTCTACATTCCTTTATCACCAAGTCTTACAATTAAACCAGAATGGCTAACAACAGTGCAGACCATCCGCCGGGGAACTCTGTCGCCGAGGTCGACCATGAAGGGGACTTTGGTTGTACAATGATGCAGCTCCGTGAGCTGATGGAGCTCCGCAGTGGCGAGGCTGTCAGCAAGATTGCAGAATGCTATGGAGATGTGCAAGGGATCTGCCGTAGGCTCAAGACCTCACCTATCGAGGGACTCTCCGGTAACCCTGCTGATATAGAAAAGCGGCATACATCGTTTGGTAAAAACTTTATCCCCCCGAAGAAGCCCAAGACTTTTCTGCAGTTGGTATGGGAGGCCCTGCAGGATGTCACTCTTATTATTCTGGAGGTGGCAGCCATTATTTCTCTCGCCCTGTCCTTCTACCACCCGCCAGAGGGAGACAACGCCgCCTGTGGCGAAGTGGGAGGTGTAGAGGATGAAGGTGAATCCCAAGCAGGTTGGATTGAAGGTGCTGCCATCTTGTTCTCTGTTATTATTGTGGTGCTGGTGACGGCCTTTAATGACTGGAGCAAGGAAAAACAGTTCCGTGGGCTGCAGAGCCGCATTGAGCAGGAGCAAAAGTTCACAGTGATCCGCAAAGGTCAGGTCATCCAGATCCCGGTGGCTGAAATCGTCGTGGGAGATATCGCACAAATCAAATACGGTGACCTTCTCCCTGCTGATGGTATCTTGATCCAGGGTAATGACTTGAAAATTGATGAAAGCTCCCTGACTGGGGAGTCCGATCAGGTCCGCAAATCTCTGGAAAAGGACCCCATGCTCCTTTCTGGAACTCATGTGATGGAAGGATCTGGCCGAATGGTGGTCTCAGCTGTGGGCCTGAATTCTCAGACTGGAATCATTTTCACCCTGTTAGGCGCCGGTGAGGATGAGGAGAAGAAGGTGAAGAAAGGTAAAAAACAAGGACCCCCTGAAAATCGCAACAAAGCCAAGACACAGGATGGCATCGCGCTGGAGATTCAACCACTGAAGAGCGAGGAAGGTGTGGAGTCAGAAGAGAAGGaggagaaagaagaaaaggagaaaaAGAAGGTTAACGTCACTAAGAAAGAAAAATCTGTCCTTCAGGGCAAGCTGACCAGGCTAGCGGTTCAGATTGGGAAAGCAGGTCTCATCATGTCTGCGGTCACAGTCGTCATCCTCATCCTGTACTTTGTCATTAAAACGTTTGGCATCGAGGGCATAGAGTGGAAGGCTGAGTGCACGCCCATCTATATACAATATTTTGTGAAGTTTTTCATCATTGGTGTGACCGTGCTGGTGGTGGCTGTGCCTGAAGGGCTTCCTTTAGCCGTCACAATTTCCCTGGCTTATTCAGTAAAGAAAATGATGAAAGACAACAACCTGGTTAGGCACCTGGATGCCTGTGAGACCATGGGTAATGCCACCGCCATCTGCTCTGACAAAACTGGAACACTGACTATGAACCGCATGACGGTGGTGCAGGCTTACATAGGCGACACACACTATAAGACTGTTCCTGAACCAGAGGCTATTAAACCAGAAATTCTTGAAATATTGGTGAACAGCATCTCCATAAACTCAGCATACACTACCAAGATTCTGCCACCAGAGAAGGAAGGGGGTTTGCCAAGGCATGTGGGCAATAAAACCGAGTGTGCCCTTCTTGGTCTGGTGCTGGAGTTGAAGAGAGACTATCAGCCTATTAGAGATGAGGTTCCTGAGGAGAAACTTTATAAAGTTTACACATTCAACTCCTCCCGTAAGAGCATGAGCACTGTCATAAAGAACAGCAGTGGTCCTGGCTTCCGGATGTACAGCAAGGGCGCCTCTGAGATTGTTCTGCGCAAGTGTTCCCATATCCTTGATGCTTCAGGCCAGCAACGTGTCTTCAAGGCCAAAGATCGGGATGAGATGGTGCAGAAAGTGATTGAGCCAATGGCCTGTGATGGGTTAAGGACCATTTGTGTAGCCATGAGGGACTTCTCAACAGAGCCAGACTGGGACAATGAGGCTGACATTTTGAATGACCTGACATGCATCTGTGTTGTTGGCATTGAAGACCCTGTCCGTCCTGAGGTTCCAGAGGCTATCTCTAAATGTCAGCGAGCAGGCATCACGGTCCGTATGGTCACCGGAGACAACATTAACACAGCCCGCGCCATCGCCACCAAATGTGGAATCCTGCAGCCTGGAGAGGACTTCCTGTGCCTGGAGGGCAAAGACTTCAACCAGCAGATTCGCAATGACAAAggagagGTTGAACAAGAACGTCTTGATAAGGTCTGGCCCAAATTGCGTGTTCTGGCCCGTTCCTCCCCAACAGACAAACACACTCTGGTAAAAGGCATCATCGACAGCACTGTTGGAGAAACCAGACAGGTGGTCGCTGTGACTGGAGACGGCACTAATGATGGTCCTGCTCTCAAAAAAGCTGATGTTGGCTTTGCTATGGGAATCGCAGGCACAGATGTTGCAAAGGAGGCTTCTGACATTATTCTTACGGATGACAACTTCACCAGTATAGTGAAGGCTGTGATGTGGGGCAGGAATGTTTACGATAGCATCTCAAAGTTCCTGCAGTTTCAGCTAACTGTCAATGTGGTGGCTGTAATTGTTGCTTTCACTGGGGCCTGCATCACACAGGACTCCCCACTTAAAGCCGTTCAGATGTTGTGGGTAAATCTAATTATGGATACACTGGCTTCTTTGGCTTTGGCAACAGAACCCCCAACAGAATCGCTCCTTCTGAGAAAACCGTACGGTCGCGACAAGCCACTCATTTCTAGGACTATGATGAAGAATATATTGGGTCATGCTATCTACCAACTCGTCATCACATTTACTCTTCTATTCGCTGGTGAGAAGTTCTTTAACATTGATAGCGGCCGCAGCGCCCTTCTCCACTCCCAACCATCCGAACATTACACCATCATTTTCAACGTCTTCGTAATGATGCAGCTCTTCAATGAAATCAATGCCCGCAAAATCCATGGAGAGAGGAATGTGTTTGAGGGAATCTACCGGAACCCCATTTTCTGCAGCGTCGTACTGGGAACATTTGCTCTGCAGATTATCATTGTGCAGTTTGGAGGGAAGCCGTTCTCCTGCACTGCCCTCACTATCGACCAGTGGCTCTGGTGCATCTTCATTGGAGTCGGCGAGCTGCTCTGGGGCCAGTTGATCACTGCTATCCCCACACATCGCCTCAAATTCCTGAAGGAGGCCGGTCACGGCATTCCCAAAGAGGACATCGCAGAGGAGGTGCTGATTGAAGGTGCTGATGAAATTGACCACGCTGAGATGGAGCTGCGCAGAGGACAGATCCTGTGGTTCAGAGGACTCAACCGTATCCAGACTCAGATGGATGTGGTTTATACATTCCAGACGGGCCAAACGGCGGTGCCTGGGGCCCTGCGTCGCCAGCCCTCTGTGGTCAGCCAGCACAACGACGCAAAAACTGTTTCTAGCCCCACCCATGTAGGGATTTCCTCTTCCTCCTTGTCCGCCAACTCTGCTGCGGCTGCTGGGCCGCCCGCCCCTGCTTCCTCTTCTACTACAGGCAGTGAGTGCCACATAACACACCCGCAAACTAGCActgctgctgcttctcgattGCCATGCTAA

Function

GO:

id name namespace
GO:0051480 regulation of cytosolic calcium ion concentration biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006816 calcium ion transport biological_process
GO:0006874 cellular calcium ion homeostasis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0005524 ATP binding molecular_function
GO:0030165 PDZ domain binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061027-60 Predicted to enable P-type calcium transporter activity and PDZ domain binding activity. Predicted to be involved in regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within calcium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Predicted to be integral component of plasma membrane. Is expressed in several structures, including blood; eye; gill; liver; and pleuroperitoneal region. Orthologous to human ATP2B4 (ATPase plasma membrane Ca2+ transporting 4).

Ensembl:

ensembl_id ENSDART00000193120

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008468 lncRNA downstream 32548 22909764 ~ 22912113 (-) True XLOC_004121
TCONS_00008467 lncRNA downstream 38761 22905199 ~ 22905900 (-) False XLOC_004121
TCONS_00008792 lncRNA downstream 850264 22089435 ~ 22094397 (-) True XLOC_004117
TCONS_00008791 lncRNA downstream 1038601 21893602 ~ 21906060 (-) True XLOC_004116
TCONS_00008790 lncRNA downstream 1038622 21893602 ~ 21906039 (-) False XLOC_004116
TCONS_00007876 lncRNA upstream 279806 23305755 ~ 23309318 (-) False XLOC_004125
TCONS_00007875 lncRNA upstream 279806 23305755 ~ 23309318 (-) True XLOC_004125
TCONS_00008793 lncRNA upstream 472316 23498265 ~ 23501763 (-) False XLOC_004128
TCONS_00008794 lncRNA upstream 472316 23498265 ~ 23525611 (-) True XLOC_004128
TCONS_00007889 lncRNA upstream 874051 23900000 ~ 23901361 (-) False XLOC_004131
TCONS_00007865 mRNA downstream 28020 22890997 ~ 22916641 (-) False XLOC_004121
TCONS_00007864 mRNA downstream 28020 22890997 ~ 22916641 (-) False XLOC_004121
TCONS_00007861 mRNA downstream 338680 22592935 ~ 22605981 (-) False XLOC_004120
TCONS_00007862 mRNA downstream 345077 22596574 ~ 22599584 (-) False XLOC_004120
TCONS_00007860 mRNA downstream 573556 22364589 ~ 22371105 (-) True XLOC_004119
TCONS_00007874 mRNA upstream 179940 23205889 ~ 23219367 (-) True XLOC_004124
TCONS_00007877 mRNA upstream 285503 23311452 ~ 23314242 (-) False XLOC_004126
TCONS_00007878 mRNA upstream 286227 23312176 ~ 23322182 (-) True XLOC_004126
TCONS_00007879 mRNA upstream 301835 23327784 ~ 23332592 (-) True XLOC_004127
TCONS_00007880 mRNA upstream 317047 23342996 ~ 23458792 (-) False XLOC_004128
TCONS_00007863 other downstream 345106 22597114 ~ 22599555 (-) True XLOC_004120
TCONS_00007852 other downstream 1192072 21752475 ~ 21752589 (-) True XLOC_004115
TCONS_00007850 other downstream 1359500 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007815 other downstream 3528346 19416178 ~ 19416315 (-) True XLOC_004096
TCONS_00007814 other downstream 3764106 19180452 ~ 19180555 (-) True XLOC_004095
TCONS_00007873 other upstream 133240 23159189 ~ 23159307 (-) True XLOC_004123
TCONS_00007888 other upstream 629401 23655350 ~ 23655478 (-) True XLOC_004130
TCONS_00007910 other upstream 1499727 24525676 ~ 24532958 (-) True XLOC_004138
TCONS_00007913 other upstream 1941822 24967771 ~ 24967887 (-) True XLOC_004142
TCONS_00007916 other upstream 2179204 25205153 ~ 25205243 (-) True XLOC_004144

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00013940 True 3777 mRNA 0.60 21 CM030125.1 47583585 ~ 47623958 (-)