RNA id: TCONS_00011265


Basic Information

Item Value
RNA id TCONS_00011265
length 2755
RNA type mRNA
GC content 0.47
exon number 1
gene id XLOC_005660
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 255067 ~ 257821 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCGTCCCCGAGCGCGTCCCTCAGATGATGTCCTGACCTTTATCTCCAAACCAACTCCACAAAAGAGTCACCGAAGCGCCATGGAGCAGAAAGAGTCTCTGGCGCTGCAGAAGCTGAGCTCCTTCAGCATCACGAGTCTCCTGCTGCCCGGTAAAAGCGGCACACCGGCGGACAGCAGCCCGGTGACCGACCCGCCGTCTGAAGAGCGCAGCTCAGAGAAAGCCAAAGACGCAGAAGACGCCGGGAAACCCGTCAAACTCGACAAACCTCCGTTCAGCTACAACGCGCTGATCATGATGGCGATCCGACAGAGCCCGGAGAAGAGGCTGACGCTTAACGGGATCTACGAGTTCATCATGAAGAACTTTCCGTTTTACCGGGAGCACAAGCAGGGCTGGCAGAACTCCATTCGGCACAATTTGAGTCTGAATAAATGTTTCGTTAAAGTGCCACGGCATTACGACGACCCCGGGAAAGGGAACTACTGGATGCTGGACCCGTCGAGCGACGATGTCTTTATCGGAGGAACCACCGGGAAACTCCGCCGACGCTCGGCGACATCCCGCGGGAAACTGGCGATCAAACGCGGACTCCGGTTTTCTCCTCTGGGGTTGCATGGAATAACGGAAACGGCGAACAATCCTCTATACTGGCAGTTATCTCCTTTATTATCTttacaccatcatcatcatcatccgcATTATAACGGGACGTCGCACGGATTTCTAAATCAGGCTCACGGTTACGGTTCTTTCGTCCACGGAGTCGAGCACCTGGGCAGCCGGGAAGCCCCGCGGGCCGTTCTCGGGGGATCCAGCGGTGCTCTCGGTCTGTCGAACGGTTACGGGATGAGTTCGTCTCCCGTTGGTTTGTTATCAGTGCCGTCGGGACTCTTACCCGCGCCGGGGCTGCAGGGCGCGCTCGGGGCCCCGCAGAGCCTCCGGACAGCGCTCGGGCCCTTCACACCCACCGGGGCCGCCGCTTTACCAGCTCTGGCCCACCACGACAGACTCTCGCCAGATTCATTGTAAACTCGTGGCGGAAGTTGGTGATGAGGAGAGCCCAGAGCTCAGCTGATGAGCAGCTCCTACAGCTCTGCGCGCAGCGGCCGGTGGAGTGTGTCCAGTACAGGggttgttcactcaaaaatgagaatatactcactatttacccTCCCTCAGCGCGGTCAAAGATTGTGTTGGTTtactcttctgttgaacactaaataagaGATTTTTAAAGGTGAAACCCATCTCTGACTTCCATAAACACCCTGCAGGAATACTCTAGAGCTCATTACAGCTTTCAGCTTTCAGCTTCTCATCCAGTGTCCAACAGAAGAAGATCTGATCCAGGTCTGAAGCGCGCAGAGGCGGAATACATGCTCACAACTCAACACAGTgtacaggacacacacacacacacacacacacacactacacatttAACGGCATCCAGAATGTTTTAACACAAAGTTGGGTGTTTTTTGGTTTccattaaatgttaaattactaACCCAAAACCCGGGTTTTCCATATGACCCAACATTCGGTTATTAGGACAACCCAGGAGCACACATTATTTATGTAGATTTATGTTTCTGTATGAGGAGGAATTAATTTATGCTTTATCTGTGTCTGTTATTATCCATGATCAGCAGCAGTCTGGCTGGAAATATTGCGGTAACCGCATGGAAaacagtcatttatagtaaataatggTGTTTTTGAACCATGTAGAGAGTAAACTGTATATAGCAGCACTGTTTATATTACATATGTCCAAACTAAGCAGTAGCTGATGTGAATATTGTACACACActttattacagtgtgtatgtggTAATATGCCCTATAGTTTATCatagtattatttgtttatattattgatGTATTACTTTACCAATTTTGGTTCAAAAACAATAAACCATTTACTATAAATTGCTCCAGAGTGTTATGTGGTGAACTCCACTATAaatataagagagagagagaatgtttattagtttatttgatttttctCAGGTTTCATAAAGAGTGTGCAGACCCTTGCAGATGCTGCATTATGGGAAgattatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgatgtgtTCAGCAGGTCATTGGTGATGCCATCATGCACAGAAACATCATGGCGGCTCTGATGTTTTATTTTCGTCTTTTCATTAAATGAGGGAACGCCGGATTATTGAGAGACTCGCAGCAGTTCACTCATGCAGGCCCACATTTACACACAATTTACGAAACATTCGGTGCCAAGAACAGCCCACAAAACAAACGGATTAGCTTAAAGTCAATCATTCGGGGTGGCGTGAAATAACACTCTTATGAAGGAGTAATAAAGCAGGGAAGGACTGGGCAGACTGAAGCTCTTCTGCTGCTCGGTTCAGCATCTCAGGCTGCTCTGAGGCCGCTAAACAACTGCAGATCCGCACATCACTATGCCACATTcagctgttgttgttgtagtaaagTTCTGCACTTTTAACAGGAGGAGAAGCTGCATGCTTCACTGAGAGAAAACCCTTTATATTTACAACATTAAACACTTTATAAAGGATCTTTGTTTGGTCAGTGTGAAGCTGAGATGTGTGTTAGGAGCATATTTAATTAAAGTGGAGAAAAGTAGCTGCAGCACAGGATCATTCCAGTGTTTTCTTTATGTTGTGCATTTGggttgtgtgtgtgctggttcAACAATAAATTAATCTTGGTTT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080305-12 Predicted to enable sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000102505

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013522 lncRNA upstream 12448 242088 ~ 242619 (+) True XLOC_005659
TCONS_00013521 lncRNA upstream 45335 202760 ~ 209732 (+) True XLOC_005656
TCONS_00013375 lncRNA upstream 231892 20646 ~ 23175 (+) True XLOC_005653
TCONS_00013374 lncRNA upstream 234488 18808 ~ 20579 (+) True XLOC_005652
TCONS_00013523 lncRNA downstream 10221 268042 ~ 269317 (+) True XLOC_005661
TCONS_00013524 lncRNA downstream 213727 471548 ~ 704248 (+) False XLOC_005671
TCONS_00013525 lncRNA downstream 213730 471551 ~ 704338 (+) True XLOC_005671
TCONS_00011279 lncRNA downstream 276637 534458 ~ 544116 (+) True XLOC_005674
TCONS_00013526 lncRNA downstream 295770 553591 ~ 560985 (+) True XLOC_005675
TCONS_00011264 mRNA upstream 16692 233482 ~ 238375 (+) True XLOC_005658
TCONS_00011263 mRNA upstream 26045 228045 ~ 229022 (+) True XLOC_005657
TCONS_00011262 mRNA upstream 76303 159504 ~ 178764 (+) True XLOC_005655
TCONS_00011261 mRNA upstream 141226 111212 ~ 113841 (+) True XLOC_005654
TCONS_00011260 mRNA upstream 239714 9100 ~ 15353 (+) True XLOC_005651
TCONS_00011266 mRNA downstream 23393 281214 ~ 285151 (+) True XLOC_005662
TCONS_00011267 mRNA downstream 53559 311380 ~ 318827 (+) True XLOC_005663
TCONS_00011268 mRNA downstream 72734 330555 ~ 363254 (+) True XLOC_005664
TCONS_00011269 mRNA downstream 145282 403103 ~ 404113 (+) True XLOC_005665
TCONS_00011270 mRNA downstream 148814 406635 ~ 407645 (+) True XLOC_005666
TCONS_00011274 other downstream 180526 438347 ~ 438462 (+) True XLOC_005670
TCONS_00011277 other downstream 244498 502319 ~ 511139 (+) True XLOC_005673
TCONS_00011289 other downstream 586322 844143 ~ 849426 (+) False XLOC_005684
TCONS_00011310 other downstream 1507686 1765507 ~ 1765622 (+) True XLOC_005701
TCONS_00011320 other downstream 2128592 2386413 ~ 2386533 (+) True XLOC_005710

Expression Profile

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