RNA id: TU241067


Basic Information

Item Value
RNA id TU241067
length 227
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G212527
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 1561128 ~ 1561354 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCTGTTTGGCAAACAGGTACACTGTATAGTGGACGTCCATACGGGTTTTGCACAAAAGATTAACATGACGGCACATGCTAGTGGATGAGTTGAATCAACTCCACAGCAACTACATAAATTTATCCACTAACCATTCAGAAACGTCCAGTTTCATTCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTCGACTCCGGTTTGAACAATGTAAGGCTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241062 lncRNA upstream 12751 1547021 ~ 1548377 (+) True G212522
TU241048 lncRNA upstream 50967 1509933 ~ 1510161 (+) True G212508
TU241007 lncRNA upstream 197199 1358603 ~ 1363929 (+) True G212473
TU241000 lncRNA upstream 224812 1332367 ~ 1336316 (+) True G212466
TU240884 lncRNA upstream 327394 1233092 ~ 1233734 (+) False G212357
TU241084 lncRNA downstream 59465 1620819 ~ 1625233 (+) True G212543
TU241092 lncRNA downstream 75965 1637319 ~ 1637547 (+) True G212550
TU241096 lncRNA downstream 104396 1665750 ~ 1666027 (+) True G212554
TU240968 lncRNA downstream 136765 1698119 ~ 1698973 (+) True CI01000050_01691894_01697791
TU241102 lncRNA downstream 161517 1722871 ~ 1723075 (+) True G212560
CI01000050_01552520_01553273.mRNA mRNA upstream 7482 1552354 ~ 1553646 (+) True CI01000050_01552520_01553273
CI01000050_01374628_01443035.mRNA mRNA upstream 117948 1374279 ~ 1443180 (+) True CI01000050_01374628_01443035
CI01000050_01346318_01366815.mRNA mRNA upstream 193471 1346195 ~ 1367657 (+) True CI01000050_01346318_01366815
CI01000050_01301443_01316664.mRNA mRNA upstream 243957 1301443 ~ 1317171 (+) True CI01000050_01301443_01316664
CI01000050_01296683_01297763.mRNA mRNA upstream 262873 1296365 ~ 1298255 (+) False CI01000050_01296683_01297763
CI01000050_01644444_01659372.mRNA mRNA downstream 83090 1644444 ~ 1659412 (+) True CI01000050_01644444_01659372
CI01000050_01662474_01662718.mRNA mRNA downstream 101120 1662474 ~ 1662736 (+) True CI01000050_01662474_01662718
CI01000050_01674592_01678560.mRNA mRNA downstream 113238 1674592 ~ 1678560 (+) True CI01000050_01674592_01678560
CI01000050_01691894_01697791.mRNA mRNA downstream 130020 1691374 ~ 1698735 (+) False CI01000050_01691894_01697791
CI01000050_01701779_01712905.mRNA mRNA downstream 140260 1701614 ~ 1713078 (+) True CI01000050_01701779_01712905
TU240937 other upstream 261522 1299364 ~ 1299606 (+) True G212403
TU240705 other upstream 1126922 433684 ~ 434206 (+) True G212184
TU240505 other upstream 1423117 82604 ~ 138011 (+) True G212006
TU240463 other upstream 1534716 22484 ~ 26412 (+) True CI01000050_00012155_00026251
TU240958 other downstream 130449 1691803 ~ 1697408 (+) False CI01000050_01691894_01697791
TU241491 other downstream 1213485 2774839 ~ 2775133 (+) True G212927
TU241503 other downstream 1281465 2842819 ~ 2843139 (+) True G212938
TU243391 other downstream 2243789 3805143 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243394 other downstream 2246260 3807614 ~ 3808739 (+) False CI01000050_03807697_03808793

Expression Profile