RNA id: TCONS_00004384



Basic Information


Item Value
RNA id TCONS_00004384
length 663
RNA type unprocessed_pseudogene
GC content 0.35
exon number 1
gene id XLOC_002299
representative True

Chromosome Information


Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36287841 ~ 36288503 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


taCTACTCTTGCATCTCCAGGACATATTTCTTTAATCTTGGAGATTTAACAGAGTGCATGGCTCTGACATTAATGGCATTAGACAGACTTATTGCCATTAGTCTTCCTTTAAGGTATCACAGCTTTGTAACAAACTCACGAATATTATGGCTTATTTTTCTAACCTGGATATTAAGTTTTGCTTTAATAGGTTTTTTGACATATGTGGCAGACACTCTTCCATACTGTCAGCCTATCATCAAATACGTGTTCTGTAGTTATTCTTCTCTGGTCCGAGCTGCCTGTGTTGATCCTGAACCCTATTTTGCTATTTCTACAGTATATAGTATGGTGACATTGTGTGGACCTTTCCCTTTTATTCTGTGCACGTATGCTGTTCTAGCATATAGTGTGACTAAACTGGCCAACTCAAGCAGAAAGCAAATGATCAACACTTGCTTAAGTCATATAATTGTCCTGTTCAGTTTTTATCTACCTAAGATCGTCTATATTTTACTAACTAAAATAGGAGTTGTGTTGACTTTAACTGAGAGAAATGCCGTTTTAATTGTATCCTGCTTTGTTTCTCTTTTAGTAAACCCCACTGTTTATTGCATCAGGACTAAAGAAATcagaagaaaaataacagatataTTCTTGTACACACAAAAAATAACCAAGTAA

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000159563

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00004376 lncRNA upstream 62961 36201194 ~ 36224880 (+) False XLOC_002294
TCONS_00004377 lncRNA upstream 62963 36201198 ~ 36224878 (+) False XLOC_002294
TCONS_00005925 lncRNA upstream 84240 36201209 ~ 36203601 (+) False XLOC_002294
TCONS_00005726 lncRNA upstream 835761 35446908 ~ 35452080 (+) True XLOC_002279
TCONS_00005923 lncRNA upstream 873564 35369819 ~ 35414277 (+) True XLOC_002277
TCONS_00004404 lncRNA downstream 374186 36662689 ~ 36668723 (+) False XLOC_002313
TCONS_00004405 lncRNA downstream 374189 36662692 ~ 36666211 (+) False XLOC_002313
TCONS_00004406 lncRNA downstream 379493 36667996 ~ 36669034 (+) True XLOC_002313
TCONS_00004409 lncRNA downstream 413337 36701840 ~ 36705717 (+) False XLOC_002314
TCONS_00004410 lncRNA downstream 417121 36705624 ~ 36706847 (+) True XLOC_002314
TCONS_00004383 mRNA upstream 734 36285568 ~ 36287107 (+) True XLOC_002298
TCONS_00004382 mRNA upstream 8700 36277528 ~ 36279141 (+) True XLOC_002297
TCONS_00004381 mRNA upstream 12952 36272178 ~ 36274889 (+) True XLOC_002296
TCONS_00004380 mRNA upstream 20402 36265164 ~ 36267439 (+) True XLOC_002295
TCONS_00004375 mRNA upstream 87790 36197968 ~ 36200051 (+) True XLOC_002293
TCONS_00004385 mRNA downstream 6138 36294641 ~ 36296945 (+) True XLOC_002300
TCONS_00004386 mRNA downstream 11038 36299541 ~ 36300976 (+) True XLOC_002301
TCONS_00004387 mRNA downstream 14464 36302967 ~ 36304931 (+) True XLOC_002302
TCONS_00004388 mRNA downstream 20569 36309072 ~ 36310557 (+) True XLOC_002303
TCONS_00004389 mRNA downstream 25776 36314279 ~ 36316758 (+) True XLOC_002304
TCONS_00004370 other upstream 127554 36158967 ~ 36160287 (+) False XLOC_002289
TCONS_00004371 other upstream 127654 36159612 ~ 36160187 (+) True XLOC_002289
TCONS_00004361 other upstream 642706 35645017 ~ 35645135 (+) True XLOC_002283
TCONS_00004360 other upstream 643043 35644719 ~ 35644798 (+) True XLOC_002282
TCONS_00004347 other upstream 989142 35288158 ~ 35298699 (+) False XLOC_002274
TCONS_00004398 other downstream 150803 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004403 other downstream 374166 36662669 ~ 36669034 (+) False XLOC_002313
TCONS_00004415 other downstream 672073 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004421 other downstream 859166 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004438 other downstream 2200205 38488708 ~ 38488829 (+) True XLOC_002333

Expression Profile


//