GENE ID: ENSDARG00000024492

Symbol Location Gene type Genome version Species
col9a2 19: 38422059 ~ 38467554 (+) protein_coding GRCz11 Danio rerio

  • PPI (protein-protein interaction) results are shown above.
  • Green is ENSDARG00000024492 (col9a2), yellow represents other genes.
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    • MARKER



    EXPRESSION

    Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
    GSE158142 (16hpf) head baseline 16hpf, 14 somites, untreatment Floor plate (cluster: 17)
    		 marker
    		 DOI:10.1016/j.neuron.2020.09.023
    GSE151354 (wild type) cartilage baseline 21dpf, wild type Chondrocytes (cluster: 1)
    Chondrocytes (cluster: 3)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE151354 (nkx3.2 mutant) cartilage growth 21dpf, nkx3.2 mutant Chondrocytes (cluster: 1)
    		 potential marker
    		 NA
    PRJNA610520 (3.5dpf) caudal hematopoietic tissue baseline 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. Fibroblasts (cluster: 16)
    		 potential marker
    		 NA
    PRJNA610520 (4.5dpf) caudal hematopoietic tissue baseline 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. Fibroblasts (cluster: 14)
    		 potential marker
    		 NA
    GSE144944 (fgfr3 +|+) cranial vault baseline 1mpf, fgfr3 +/+ Chondrocytes (cluster: 5)
    		 potential marker
    		 NA
    GSE126647 (Pbx4-depleted) embryo growth 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
    PRJNA656271 (2dpf) embryo baseline 2dpf, FACS-isolated EGFP+ cells
    PRJNA640816 (2dpf) embryo baseline 2dpf, FACS isolated -4.9sox10:EGFP+ cells Otic (cluster: 10)
    		 potential marker
    		 NA
    PRJNA640816 (2.9dpf) embryo baseline 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells Melanoma cells (cluster: 2)
    		 potential marker
    		 NA
    PRJNA564810 (5dpf) embryo baseline 5dpf, a single-cell transcriptome atlas for zebrafish development Chondrocytes (cluster: 6)
    		 potential marker
    		 NA
    PRJNA564810 (2dpf) embryo baseline 2dpf, a single-cell transcriptome atlas for zebrafish development Cranial neural crest (cluster: 27)
    Chondrocytes (cluster: 5)
    		 potential marker
    potential marker
    		 NA
    NA
    PRJNA564810 (1dpf) embryo baseline 1dpf, a single-cell transcriptome atlas for zebrafish development Floor plate (cluster: 23)
    		 potential marker
    		 NA
    GSE158142 (14hpf) head baseline 14hpf, 10 somites, untreatment Floor plate (cluster: 13)
    		 potential marker
    		 NA
    GSE158142 (18hpf) head baseline 18hpf, 18 somites, untreatment Floor plate (cluster: 16)
    		 potential marker
    		 NA
    GSE158142 (20hpf) head baseline 20hpf, 21-22 somites, untreatment Floor plate (cluster: 10)
    		 potential marker
    		 NA
    GSE158142 (24hpf) head baseline 24hpf, untreatment Optic vesicle (cluster: 14)
    		 potential marker
    		 NA
    GSE158142 (1.5dpf) head baseline 1.5dpf, untreatment Chondrocytes (cluster: 7)
    		 potential marker
    		 NA
    GSE158142 (2dpf) head baseline 2dpf, untreatment Chondrocytes (cluster: 6)
    		 potential marker
    		 NA
    GSE158142 (3dpf) head baseline 3dpf, untreatment Chondrocytes (cluster: 5)
    		 potential marker
    		 NA
    GSE150498 (untreated ctrl) intestine baseline 6dpf, untreated ctrl Chondrocytes (cluster: 2)
    		 potential marker
    		 NA
    GSE150498 (DSS treated) intestine disease 6dpf, DSS treated Chondrocytes (cluster: 13)
    		 potential marker
    		 NA
    GSE150498 (wildtype, 1X DSS) intestine disease 6dpf, wildtype, 1X DSS Chondrocytes (cluster: 7)
    		 potential marker
    		 NA
    GSE150498 (nod2-|-, 1X DSS) intestine disease 6dpf, nod2-/-, 1X DSS Chondrocytes (cluster: 15)
    		 potential marker
    		 NA
    GSE122680 (24hpf) retina baseline 24hpf, WT, untreatment Muller glia cells (cluster: 5)
    		 potential marker
    		 NA
    GSE122680 (1.5dpf) retina baseline 1.5dpf, WT, untreatment Muller glia cells (cluster: 10)
    		 potential marker
    		 NA
    GSE122680 (3dpf) retina baseline 3dpf, WT, untreatment
    GSE152982 (wild type) trunk baseline 1.25dpf, untreatment Notochord (cluster: 15)
    		 potential marker
    		 NA
    GSE176129 (pdgfrb-positive) whole body baseline 5dpf, FACS-isolated pdgfrb-positive cells Chondrocranium cells (cluster: 10)
    Chondrocytes (cluster: 16)
    Pronephros (cluster: 28)
    		 potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    GSE158099 (WT) whole body baseline 2.5dpf, cd41:GFPlow-WT Chondrocytes (cluster: 3)
    		 potential marker
    		 NA
    GSE158099 (runx1 -|-) whole body hematopoietic 2.5dpf, cd41:GFPlow-runx1-/- Chondrocytes (cluster: 2)
    		 potential marker
    		 NA
    GSE158099 (WT) whole body baseline 6dpf, cd41:GFPlow-WT Neuron (cluster: 12)
    		 potential marker
    		 NA
    PRJNA415636 (brain) brain baseline adult, Zebrabow M, brain
    PRJNA554650 (6.5dpf) brain baseline 6.5dpf, whole brain of nr1d1:VNP fish
    GSE158142 (15dpf) brain, eye baseline 15dpf, untreatment
    GSE158142 (5dpf) brain, eye baseline 5dpf, untreatment
    GSE158142 (8dpf) brain, eye baseline 8dpf, untreatment
    GSE144944 (fgfr3 -|-) cranial vault growth 1mpf, fgfr3 -/-
    GSE173972 (WT, ezh1+|+) embryo baseline 1.25dpf, Kdrl-positive embryos
    PRJNA656271 (24hpf) embryo baseline 24hpf, FACS-isolated EGFP+ cells
    PRJNA706197 (24hpf) embryo baseline 24hpf, FACS sorted sox10:nEOS cells
    PRJNA706197 (12hpf) embryo baseline 12hpf, FACS sorted sox10:nEOS cells
    PRJNA734348 (dome, dnmt1) embryo growth 4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
    GSE173972 (HET, ezh1+|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos
    GSE168695 (5dpf) embryo baseline 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
    PRJNA706197 (1.25dpf) embryo baseline 1.25dpf, FACS sorted sox10:nEOS cells
    PRJNA706197 (14hpf) embryo baseline 14hpf, FACS sorted sox10:nEOS cells
    PRJNA656271 (1.5dpf) embryo baseline 1.5dpf, FACS-isolated EGFP+ cells
    PRJNA734348 (shield, control) embryo baseline 6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
    GSE126647 (control) embryo baseline 1.17dpf, control nkx2.5:ZsYellow+ cells
    GSE173972 (KO, ezh1-|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos
    PRJNA706197 (18hpf) embryo baseline 18hpf, FACS sorted sox10:nEOS cells
    GSE106587 (WT) embryo baseline 12hpf, 6 somites, wild-type TLAB embryo
    PRJNA734348 (shield, dnmt1) embryo growth 6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
    PRJNA706197 (20hpf) embryo baseline 20hpf, FACS sorted sox10:nEOS cells
    PRJNA734348 (dome, control) embryo baseline 4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
    GSE161712 (M. marinum) granulomas disease adult, infected with bacteria of M. marinum
    GSE158142 (12hpf) head baseline 12hpf, 6 somites, untreatment
    PRJNA608912 (kit_14dpi) heart regeneration 5mpf, kit mutant, 14 days post injury
    PRJNA608912 (kit_uninjuried) heart regeneration 5mpf, kit mutant, uninjured
    PRJNA608912 (wt_2dpi) heart regeneration 5mpf, wild type, 2 days post injury
    PRJNA608912 (kit_2dpi) heart regeneration 5mpf, kit mutant, 2 days post injury
    PRJNA608912 (wt_7dpi) heart regeneration 5mpf, wild type, 7 days post injury
    PRJNA608912 (kit_7dpi) heart regeneration 5mpf, kit mutant, 7 days post injury
    PRJNA608912 (wt_14dpi) heart regeneration 5mpf, wild type, 14 days post injury
    PRJNA608912 (wt_unjuried) heart baseline 5mpf, wild type, uninjured
    PRJNA415636 (heart, blood) heart, blood baseline adult, Zebrabow M, heart and blood
    PRJNA754013 (zebrafish) hypothalamus baseline adult, male, female, untreatment
    GSE150498 (wildtype, 2X DSS) intestine disease 6dpf, wildtype, 2X DSS
    GSE150498 (nod2-|-, 2X DSS) intestine disease 6dpf, nod2-/-, 2X DSS
    GSE150498 (nod2-|-, 2X DSS+BZA) intestine disease 6dpf, nod2-/-, 2X DSS+BZA
    PRJNA605021 (supporting cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
    PRJNA605021 (hair cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
    PRJNA668529 (3h) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 hours
    PRJNA668529 (control) olfactory rosette baseline 3mpf, intranasal PBS
    GSE148591 (6mpf) pituitary baseline 6mpf, male, Sox17:CreERT2
    GSE148591 (3mpf) pituitary transplant 3mpf, graft transplantation during early embryogenesis
    GSE122680 (2dpf) retina baseline 2dpf, WT, untreatment
    PRJNA672101 (nrl-KO) retina growth 5mpf, three retinas from nrl-KO zebrafsih
    GSE175929 (5mpf) retina baseline 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
    GSE122680 (14dpf) retina baseline 14dpf, WT, untreatment
    PRJNA672101 (WT) retina baseline 5mpf, three retinas from WT zebrafsih
    PRJNA551501 (2mpf) thyroid gland baseline 2mpf, Tg(tg:mVenus-T2A-NTR)
    PRJNA551501 (8mpf) thyroid gland baseline 8mpf, Tg(tg:mVenus-T2A-NTR)
    GSE163907 (24hpf) trunk baseline 24hpf, trunk tg(sox10:GFP) positive cells
    GSE131136 (all) trunk, skin baseline 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
    PRJNA641144 (C_PRO) tumor disease adult, ZMEL1-PRO cells in vitro co-culture
    PRJNA641144 (D_INV) tumor disease adult, ZMEL1-INV cells in vitro individual culture
    GSE159709 (melanoma) tumor disease adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
    PRJNA641144 (P_PRO) tumor disease adult, ZMEL1-PRO cells in vivo primary tumors
    PRJNA641144 (D_PRO) tumor disease adult, ZMEL1-PRO cells in vitro individual culture
    PRJNA641144 (M_INV) tumor disease adult, ZMEL1-INV cells in vivo metastases
    PRJNA641144 (C_INV) tumor disease adult, ZMEL1-INV cells in vitro co-culture
    PRJNA641144 (M_PRO) tumor disease adult, ZMEL1-PRO cells in vivo metastases
    PRJNA641144 (P_INV) tumor disease adult, ZMEL1-INV cells in vivo primary tumors
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/-
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/-
    GSE158099 (runx1 -|-) whole body hematopoietic 10dpf, cd41:GFPlow-runx1-/-
    GSE158099 (WT) whole body baseline 16dpf, cd41:GFPlow-WT

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