RNA id: TCONS_00011328


Basic Information

Item Value
RNA id TCONS_00011328
length 6462
RNA type mRNA
GC content 0.55
exon number 35
gene id XLOC_005712
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 2442841 ~ 2498321 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAGGAGATTCTGCGGAGGCTTCAGAAGGAGGCGTCGGGCAGTAAATACAGGGCGATCCGGGACTCCTGCGGTGTGGCCATCAGATACTTAGAATCATTAGACATCAACTGCTCCAATCGTGGACTATTTTTGTGCAGAGAGAAGTGTTTATTCCCTCTTCAGTTGGCGCTGGAGTCTAAAAACACCAAACTGGCACAGACGGCCCTCACTGGGATGCAGAAGATCCTGTGTGAGGATTGTTTTCTCGCGGTGGAAGCAGAAGCTCCAGAGAAACAACTGTTGGGTCAAATCCTGGAAGCTGTCAGAGTGACGCCGAGCCTCCATGAAGACCTGCAGGTGGAGGTTATgaaggtcctaCTTTGCGTCACCTACTCCTCGACCTTCGAGATCACTGGCCGCAACATCTTGAAAATTGCTGAGGTATGTATAGAGACGTATATATCCAGTTGTCATCAGCGCAGTATCAACACGGCGGTCAGAGCCACTCTCAGCCAGATTCTTGGAGACCTCACTCTACAGCTACGCCATAGACAAGAAAACACAGTGAatgtctctccCAGTACTGAGGCGCTGTATGAAGATGTTGTCATGGTCCTCACTGTTTTCTGTGACAAACTGGAGTCCGTCTCAAAtgaaaaccAGCTGCTGCAGCTGTTGTACCTGGAGTCTATTTTGTCCATGCTCAGCAGCTGTCCTCCCACAATGCACCTGCAGCGAAACTTCACTGACCTAGTCTGGAAGCAGTTATGTCCCACCCTGGTGGTGATAATGGGAAACCCAGCGAGTGATAAGAGCATCACCTCTGCTCATGGCGCTCAGTGTCAGGACTCAGTATCAGCCCCGGGGTCAGCGGTTCTGGATCAGGGCAGGGGTTCGGGATGCTCCTCTAGTGCTCCGCTTATGATTGGGCCGGTGGTCCGGACCATCTGCTATGTGGCTGCAGAGTTGGTGCGTCTGGTAGGCTGTGTCGAGTCCATGAAACCTGTTTTGCAGTCTCTGTACCACCGTATTCTGCTCTACCCGCCACCCCAACACAGAGTGGAGGCCATTAAGATTATGAAAGAGATTGTGGGAAGCCCCCAGCGCTTGTTTGACCTCGCCGGTCCATGCGTGATTGAACACGAGACGAGAAAGAGGTCTTTCTCCAAAAGGAAATCACATCTCGATCTTCTCAAACTCGTAATGGATGGCATCACAGAAGCGTGTATGAAGGGTGGGATTGAGGCCTGTTACTCCTCCGTCTCCTGCGCCGGGGCCCTATTAGGTGCCTTGGATGAGCTCAGTCAGGGGCGTGGCCTGCAGCAGGACCAGACCCGCATGCTGCTGCGCCGATTGGAGGAGCTCAAGGAAGGGGCGGAGTCAATGCGTGAGTCTGTGGAAGTCAACGAAGCGGACTTCCGCTGGCAGCGGCGAGTGCTCTCATCCGAAAACGCTGCATGGGAGGCGAGCATTACCGAACGCAGCCCTGACATTAGCATTAGCGTCACCACCGACACAGGGCAGACTACGCTTGAAGGGGATATGGGGAGGACCACTCCTGAAGATTGCGGGGACGAACCGCGACTACCTTCGCCTACCTGTGGATCTCGTCAGGAGTGTGTCGCACCTGAAATCTCATCCTCTACGGCTCCTCCTGACGTAGTGCAACGCAGCCATGGCCTAGCCTATCCTGACATCACCAACTTCTTATCGGTGGAGTCCCGGACGCGTTCGCATGGCTCCCGATACAGCGAGAGTAACTTCAGTGCCGACGAGCAGGAGCTGTCCAGAACAGAGTTTGACTCCTGTGATCAGTACTCCATGGCTGCAGAAAAGGACTCCGGACGGTCTGATGTATCCGATATGGGCTCTGATAACTGCTCATTGGCTGATGAGGAGCAGACGCCGCGGGACTGTCCCGGCCACCGTACACTGCGGACTGCAGCTTTGTCTTTAAAGCTGCTGAAGAACCAGGAGGCGGACCAACAGAGCGCAAGGCTCTTTGTGCAGTCTCTAGCCACACTTCTGCCCCGTCTGCTGGGACTGCACAGCACCACAGATGTAGATGCGACCCTGCAGAACTTCTCCTCCACCTTCTGTGGGGTTCATTCTCCAGGTTTCGAGGGCAATGAAAACCTGAACTGTCAGGCTCTAATGAACGCAGACGGATTGTACCTGGTCTCCTATTATGCTCTCCTGCTCAACCTCAAGCTGTGCTGCTGTGACTATTACCACAGAAAGCCCACGTCTGCTCTGGTGTCTCTGAAGGAGTTTGTGCGTCAGATTCAGAGCAGTGGGGTTCTGGTGGTCTTGTCTCAGGCCTGGATAGAGGAGCTTTATAACCAGGTTTTGGAGAGAAACCTGCTGGGAGAAGCGGGATACTGGGGCTCGGCTGAGGAGCAGTCTTTACCCCTCATCACCATGCTCACTGATATTGATGGACTGGGCAGCAGCGCTATTGGTGGTCAGCTGATCAGAAAAGCCTCATCACAGTCACCCTTCACCTGTGACAAAAACGGCAATGACAGCCTGGTGGCAGGTGTGGTTTTTGCGCGTTACATCCTGACCGGCTGCTGGAAAAACCTGATCGACACACTGTCCACGCCGCTCACAGGGCGCATGGCTGGAAGCTCTCGCAGTCTGGCTTTCATTCTGGGGGCAGAGGGCGTTAAAGAGCAGACGCAGAGGGAAAGAGACACCATCTGCCTCAGTCTGGACGGTCTGCGCAAGGCTGCAGCGCTCAGCTGCGCTCTGGGGGTGGCAGCCAACTGTGCTTCAGCACTGGCGCAGATGGCAGCGGCTTCATGTGTTCAGGAGGACAAAGAGGAGAAAGAATTAGGAGACACTGGAGATGCCATTACTCAAGtgaAGCAGCGTGTGGAACAGAAGCTGGAGCAGATGAGCCGTTCTCAGGGCGTGAGGCTTCACACTGCTCATGTCCTCTGCATGGACGCCATTCTCAACGTGGGCCTGGAAATGGGCAGCCATAACCACGACTGCTGGCCTCACGTCTTCAGGGTGATCGAGTATGTGAGTACACTGGAGCACACTCACTTCAGTGACGGCGGCTCTCAGCCTCCTCTGGCCATCACGCAGGCGCAGCAGGCTGTAGCCGTGGATCTGGATCTGGGTCTGGATCTGAGCGCAGAGGTCAGTCCGGAGCTGGAGCTGAGCCTCAGTCAGCCTGTCATCCAGCCGCTCTCCATCCAGCAGCTCCTGAAGGACAGCGCTCGCGGGAAAGCCTTGGATCTGCGGGGCGGGAGTCTGCTCACGGGAACCAGCGCAGCCAAAGCCGTCTGCACACTTTCCACACAAGCTGACAGGCTGTTTGAGGACGCCGTCAGTAAACTCAACCTCGTGAGTCTTGTGGGATTCCTGCATCAGCTCAGAAAAGCTTCACAGTCTCAGCTGTTTGATTCCGTCACAGAAACTGGAGACTATTCACTGGCCATGCCAGGAGAGGCAAAGTCGACCCAGGACAAGCGCAGCGCCCTGCACCTCTTCCGGCTGGGAGAAGCCATGCTGCGCATCGTGAAGAACAAGAGCAGGCCGCTGCTGCACATGATGAGAGCCTGGAGCGTTGTAGCACCACACCTGGTGGAGGCGGCCTGTCACAAGGAGCGCCACGTGTCCCAGAAGGCCGTGTCCTTCATCCATGATGTCCTGATGGAGGTTTTGAGCAGCTGGCCGGAGCTGCCGCATTTTCACTTCAATGAGGCTCTTTTCAGACCGTTTGAGCACATCATGCAGCTGGAGCTCTGCGATGAAGACGTCCAGGATCAGGTGATCACTTCCATCGGAGAGCTGGTGGAGATGTGTTCAGCGCAGATTCAGTCTGGATGGAGGCCGCTCTTCAGCGCTCTCAGAACCGTGCATGGAAACAAGACGGATGTCAAGGATTATCTGATAGGAGAATATTCTATGGGGAAGTCTCAGGCTCCAGTGTTTGATGTGTTTGAAGCCTTCATTAACACAGACAACATTCAGGTGTTTGCTAACGCCGCCACCGACTACATCATGTGCCTTATGAAGTTTGTCAAAGGTTTAGGTGAAGTGGACTATAAGGAGATTGGCGATTGTGTTCATGTCAGTGGATACAGCTCTACAGATCTGTGTCTGCCTGCGCTCGATTACCTGAGGAAGTGCTCACAGCTGCTTGCCAAGATCTATAAGATGCCATCAAAGCCTGTGTTTCTGGGTGCGCGGCTGGCGAGTCTCCCAATGAGAGTGCAGGAGAGATCCGTGAGCAGCGAAGACGGCTTGGACTGTGTGCTAGCCGAGTTTGATGACGATACAGgtCTGATTCAGGTGTGGATCCTGCTGTTGGAGCAGCTGACAGCCGCTGTGTCCAACTGTCCCCGACAGCATCAGCCGCCGACCCTCGAGCTGCTGTTTGAGCTTCTGCGGGAGGTCACCAAAATACCAGGGCCCGGTTTCGCCATCTTCTCTGTCATCCAGCTGCTTCTTCCTGTGATGTCACTGTGGCTCCAGCGTAGTCATGGCGATCACTCATACTGGGACATCGCAGCCGCAAACTTCAAACACGCCATCGGACTGTCCTGTGAGCTGGTGGTGGAGCACATCCACAGCTTCATACATTCAGATATTGGCTATGAGAGTCTGATTAACCTGATGCTGAAAGATCTCTTCAAACTGCTGGTTTCCTGTGTGGCAGAACCGGCTGAAACCATTTCCAGAGTCGGCTGCTCCTGTATCAGGTATGTTCTGGTAACCGCCGGGCCTGTTTTCACTGAGGAGATGTGGCGTTTAGCATGCTGTGCCCTGCAGGACGCTTTCTCAGCCACTTTGGAGCCTGTCAAGAACTTGCTGGCCTGTTTCCGGAGCGGTTCAGACAGTTTCACTGGAGATGCGTGTGAAGTGAAAGTGGCAGCCCCGTCACACTCTCCCTCAGCAGAAGCAGAGAACATGAGGATTCGGGCCATGGCTCAACAGGTGTTCATGCTGGATACGCAGTGCTCTCCTAAAACTCCCAGCAGCAAGGATGGGTTTGAGCATGCTCAGTCCTGCGTGCTGATCATTGAGCTTCCAGCTGACCAGCACTCCAACGGCCAAGCTCAGAAGAGGATCCCGTTCAGGACTCTGGTTGTGAGTTTACTGTCCCATCAGGTGCTCCTGCAGAATCTGTATGACATCCTGTTAGAGGAGTTTGTCAAAGGTTCTGAGGGCAAAATCACGGCTGTGTCGGAGCCAAAACCTGCAGGATTTCTCCGCTACATCTCCATGCAGAACCTGGCCATCATCTTTGACCTCCTGCTGGACTCGTATCGGACTGCCCGGGAATTTGACACCCGTCCTGGCCTGAAGTACCTGCTCATGAAAGTGTCCGGAGTGTGTGGAGCTGCTAACTTATACCGCCAGTCTGCCATGAGCTTCAATATCTACTTTCAGGCTCTGCTTTGTGCAATGCTGACAAACCAGGAGAACATGAGCGTGGAGCAGGTGAAGAAGATCCTGagtgaggaagaggagggcggatCAGACTCCTCTCAGCAGTGCTCCTCCGAGGACGAGGATATATTTGAAGAAATGGCTCAAGTGAGTCCTCCACGTGCCCGAGAGAAACGTCAGTGGCACACGCGTATCCCATCTCTGAGCACGCAGCCCGCCAGCAGTGCCGACTGGGCCTGGCTGGTAAAACGTCTGCACAAACTCTGCATGGACTTGTGCAACAACTACATCCAGATGCACCTGGACCTGGAGAGTACTTTGGGAGAGCAACCCACCCATCGTGCTGACCCACTCTTTTTCTTGCCCCTTTTTAATTCTGAGACTTCCACGCCCTCAACTGGTGGCCTGTCTGGCCACGGGACTCCTTCAGAAGACAGTTTCCGCCTTAACCTGGATGAGACGCCCTCAGAAGACGTTCATAGTCCCGGCGGGTCAAACGCAAGCTTTCCCCAGCGGCGGGACGGGGGCCGCAAGAAGGAATGGTGGGAGAGTGCTGGAAACAAGCTGTACACCATAGCCACCGACAAGACCATTACCAAACTGATGATCGAGTACAAGAAAcgcaagcagcagcagcagcacaatCACACCATGTTTGCCAAAGATGTGAAGGCAGGAGAAAAGAGGGGCGAGCCTGTGACCCTACGAGGCCCGGACTCGCCCGGACCGCAGAGGCCCCAACAGCTGGTTGAACAGGGGCCCATGAGGCATTCCTTTAGTGCGGGACCCGAGCTGCTGCGGCAGGAGAAAAGACCACGATCGGGATCCACAGCCAGTTCACACAACATCTCTCTCAGAGATTCTGAGGCGCAGATACAGGCCTGGACAAACATGGTCCTGACCATCCTGAATCAGATCCAGCTTCTGCCGGACCCCACGTTCATGGCTCTGCAGCCGGCGGTGTTTCCCTGCATCAGTCAGCTGACCTGTCATGTGACCGAGCTGCGCGTGCGGCAGGCGGTGCGTGAGTGGCTGGGCCGAGTGGGACGCGTTTATGACATCATCCTGTGA

Function

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0032012 regulation of ARF protein signal transduction biological_process

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-081107-37 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in actin cytoskeleton organization. Predicted to act upstream of or within regulation of ARF protein signal transduction. Orthologous to human ARFGEF3 (ARFGEF family member 3).

Ensembl:

ensembl_id ENSDART00000189722

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011324 lncRNA upstream 31936 2394622 ~ 2410905 (+) True XLOC_005711
TCONS_00011318 lncRNA upstream 89846 2352289 ~ 2352995 (+) True XLOC_005708
TCONS_00013539 lncRNA upstream 289825 2149770 ~ 2153016 (+) False XLOC_005706
TCONS_00013538 lncRNA upstream 289825 2149770 ~ 2153016 (+) True XLOC_005706
TCONS_00011315 lncRNA upstream 413384 2010287 ~ 2029457 (+) True XLOC_005705
TCONS_00013540 lncRNA downstream 173111 2671432 ~ 2676336 (+) True XLOC_005715
TCONS_00013541 lncRNA downstream 425599 2923920 ~ 2928455 (+) False XLOC_005722
TCONS_00013542 lncRNA downstream 426510 2924831 ~ 2928455 (+) True XLOC_005722
TCONS_00013376 lncRNA downstream 444960 2943281 ~ 2944990 (+) True XLOC_005723
TCONS_00011344 lncRNA downstream 761222 3259543 ~ 3260961 (+) True XLOC_005725
TCONS_00011323 mRNA upstream 25432 2394534 ~ 2417409 (+) False XLOC_005711
TCONS_00011322 mRNA upstream 30990 2394534 ~ 2411851 (+) False XLOC_005711
TCONS_00011321 mRNA upstream 31931 2394264 ~ 2410910 (+) False XLOC_005711
TCONS_00011319 mRNA upstream 50177 2357637 ~ 2392664 (+) True XLOC_005709
TCONS_00011317 mRNA upstream 92079 2338762 ~ 2350762 (+) True XLOC_005707
TCONS_00011331 mRNA downstream 24711 2523032 ~ 2526033 (+) True XLOC_005713
TCONS_00011332 mRNA downstream 40315 2538636 ~ 2625217 (+) False XLOC_005714
TCONS_00011333 mRNA downstream 119234 2617555 ~ 2665113 (+) False XLOC_005714
TCONS_00011334 mRNA downstream 126829 2625150 ~ 2665113 (+) True XLOC_005714
TCONS_00011335 mRNA downstream 234630 2732951 ~ 2828218 (+) False XLOC_005716
TCONS_00011320 other upstream 56308 2386413 ~ 2386533 (+) True XLOC_005710
TCONS_00011310 other upstream 677219 1765507 ~ 1765622 (+) True XLOC_005701
TCONS_00011289 other upstream 1593415 844143 ~ 849426 (+) False XLOC_005684
TCONS_00011277 other upstream 1931702 502319 ~ 511139 (+) True XLOC_005673
TCONS_00011274 other upstream 2004379 438347 ~ 438462 (+) True XLOC_005670
TCONS_00011338 other downstream 334771 2833092 ~ 2833207 (+) True XLOC_005718
TCONS_00011360 other downstream 1464446 3962767 ~ 3966255 (+) True XLOC_005731
TCONS_00011389 other downstream 3487455 5985776 ~ 6001981 (+) True XLOC_005757
TCONS_00011399 other downstream 3915963 6414284 ~ 6414400 (+) True XLOC_005764
TCONS_00011412 other downstream 4883197 7381518 ~ 7381633 (+) True XLOC_005774

Expression Profile

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