Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00007475 |
| length | 3384 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 7 |
| gene id | XLOC_003903 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 7107798 ~ 7147540 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0065003 | protein-containing complex assembly | biological_process |
| GO:0036342 | post-anal tail morphogenesis | biological_process |
| GO:0003143 | embryonic heart tube morphogenesis | biological_process |
| GO:0060395 | SMAD protein signal transduction | biological_process |
| GO:0048264 | determination of ventral identity | biological_process |
| GO:0030509 | BMP signaling pathway | biological_process |
| GO:0009953 | dorsal/ventral pattern formation | biological_process |
| GO:0007368 | determination of left/right symmetry | biological_process |
| GO:0021703 | locus ceruleus development | biological_process |
| GO:0003303 | BMP signaling pathway involved in heart jogging | biological_process |
| GO:0001947 | heart looping | biological_process |
| GO:0042664 | negative regulation of endodermal cell fate specification | biological_process |
| GO:0010862 | positive regulation of pathway-restricted SMAD protein phosphorylation | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0005125 | cytokine activity | molecular_function |
| GO:0042802 | identical protein binding | molecular_function |
| GO:0046982 | protein heterodimerization activity | molecular_function |
| GO:0070700 | BMP receptor binding | molecular_function |
| GO:0008083 | growth factor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-000208-25 | Enables identical protein binding activity and protein heterodimerization activity. Acts upstream of or within several processes, including determination of bilateral symmetry; negative regulation of endodermal cell fate specification; and post-anal tail morphogenesis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including epiphysis; gastrula cell; margin; prechordal plate; and tail bud. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human BMP7 (bone morphogenetic protein 7). |
| ensembl_id | ENSDART00000016472 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00007460 | lncRNA | downstream | 237763 | 6869316 ~ 6870035 (-) | False | XLOC_003897 |
| TCONS_00008754 | lncRNA | downstream | 307860 | 6792546 ~ 6799938 (-) | True | XLOC_003895 |
| TCONS_00008753 | lncRNA | downstream | 651498 | 6455034 ~ 6456300 (-) | True | XLOC_003893 |
| TCONS_00008752 | lncRNA | downstream | 676450 | 6429973 ~ 6431348 (-) | True | XLOC_003891 |
| TCONS_00008751 | lncRNA | downstream | 676666 | 6429973 ~ 6431132 (-) | False | XLOC_003891 |
| TCONS_00008451 | lncRNA | upstream | 206245 | 7345800 ~ 7349497 (-) | False | XLOC_003908 |
| TCONS_00008755 | lncRNA | upstream | 206371 | 7345926 ~ 7349386 (-) | False | XLOC_003908 |
| TCONS_00008756 | lncRNA | upstream | 206371 | 7345926 ~ 7349427 (-) | True | XLOC_003908 |
| TCONS_00007486 | lncRNA | upstream | 222869 | 7362424 ~ 7365383 (-) | True | XLOC_003910 |
| TCONS_00008757 | lncRNA | upstream | 634277 | 7773832 ~ 7775701 (-) | False | XLOC_003912 |
| TCONS_00007474 | mRNA | downstream | 29323 | 7050129 ~ 7078475 (-) | True | XLOC_003902 |
| TCONS_00007473 | mRNA | downstream | 29406 | 7040868 ~ 7078392 (-) | False | XLOC_003902 |
| TCONS_00007472 | mRNA | downstream | 56973 | 7039259 ~ 7050825 (-) | False | XLOC_003902 |
| TCONS_00007471 | mRNA | downstream | 77751 | 7002010 ~ 7030047 (-) | False | XLOC_003901 |
| TCONS_00007470 | mRNA | downstream | 77751 | 7002010 ~ 7030047 (-) | True | XLOC_003901 |
| TCONS_00007478 | mRNA | upstream | 12024 | 7151579 ~ 7156693 (-) | False | XLOC_003905 |
| TCONS_00007479 | mRNA | upstream | 13061 | 7152616 ~ 7156660 (-) | False | XLOC_003905 |
| TCONS_00007480 | mRNA | upstream | 15459 | 7155014 ~ 7156620 (-) | True | XLOC_003905 |
| TCONS_00007481 | mRNA | upstream | 113522 | 7253077 ~ 7261717 (-) | True | XLOC_003906 |
| TCONS_00007482 | mRNA | upstream | 141685 | 7281240 ~ 7320211 (-) | True | XLOC_003907 |
| TCONS_00007463 | other | downstream | 159780 | 6944300 ~ 6948018 (-) | False | XLOC_003898 |
| TCONS_00007456 | other | downstream | 325722 | 6780708 ~ 6782076 (-) | True | XLOC_003894 |
| TCONS_00007441 | other | downstream | 901209 | 6197276 ~ 6206589 (-) | False | XLOC_003884 |
| TCONS_00007438 | other | downstream | 1035732 | 6071960 ~ 6072066 (-) | True | XLOC_003881 |
| TCONS_00007400 | other | downstream | 3153961 | 3953723 ~ 3953837 (-) | True | XLOC_003853 |
| TCONS_00007494 | other | upstream | 971814 | 8111369 ~ 8126195 (-) | True | XLOC_003913 |
| TCONS_00007548 | other | upstream | 4185967 | 11325522 ~ 11331050 (-) | False | XLOC_003936 |
| TCONS_00007549 | other | upstream | 4191170 | 11330725 ~ 11331090 (-) | True | XLOC_003936 |
| TCONS_00007551 | other | upstream | 4199249 | 11338804 ~ 11339100 (-) | True | XLOC_003938 |
| TCONS_00007552 | other | upstream | 4228039 | 11367594 ~ 11367890 (-) | True | XLOC_003942 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000058_01298298_01311989.mRNA | True | 2812 | mRNA | 0.44 | 10 | CI01000058 | 1298076 ~ 1313046 (+) |
