RNA id: XM_043222627.1


Basic Information

Item Value
RNA id XM_043222627.1
length 2189
RNA type mRNA
GC content 0.52
exon number 18
gene id pxk
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5561280 ~ 5577002 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACAACATTAGCATCGCCGCTAGCGGCTTCGCTCGTGTTACAAACTCCAAAAGAAAATTCATAACAACGAGCGCGTGAACAAACTAGAAAGCGGTCGGTTTGCTGCTCCGTGAAGTTCACTTTTATTCCGAGCCCCGCGGGAAATAACATGACTCAATTTAGCCGTGAGCCCTATGAGGTTTCCTGTTAGACGGCGTTTCCTAAAATATGGCGTCGtttatttcttcttgtttttattgaaaCGACAACACGTCACAAGAACTGTACACAAGCGTGAataattttacatgtttttttttttacattaaaagacaCCGTGCTGAAAAACGCGGCGCCGTTCGCTTTCCCTCGATAGTGCGCACTACAGAGTGGACGGGCTCCTCTCCGCCGAAACATCTACGTCAGGTTTCACTGGCGGTTTCTGATTCGTTTCTCCCACGTTGTCACAAGCGCAGACGCGCAGCGAACCGTCACATCCCTTTACCGACCGAGGCGGGCTCTCGGTAACCGAACCCTGTCGAACCGGGGCTGTTTGGTCTTGTTTTGGTCCGGGATGGCGTTCATGGAGCAACAGCCGCAGCCGTTGTCCGGCAGGAAGCCGCCGCTGGACGACACCGTGTCGCTCATCGCCGTGATCGAGGCCAGCCAGAGTTTACAGTCGCACACGGAGTACATCATTCGTGTCCAGAGGGGCGTTTCTGCAGACAACAGCTGGACGGTCATCCGCAGATACAGTGATTTTGACATGCTGAATAATAGTTTACTGATCTCGGGCCTCAACCTGCCACTTCCTCCTAAGAAGCTGCTAGGAAACATGGACCGAGAGTTCATAGCCGAGCGTCAGAAGGGTCTTCAGGCTTATCTGAACTACATCACACGCCACCACGTCCTCTCCAGCTGTGAGCTGGTCAAAAAGTTTCTCGACACTAACAATTACTCTGCAAACTACACAGAAATAGCCTTACAACAAGTGTCCATGTTCTTCAGATCCGATCCAAAATGGGAGGTTATTGAGCCGCTAAAAGACATTGGCTGGAGATTGAGAAAGAGGTACTTCCTCGTCAAAGACAAAGATCAGCCCAAAGACAAACAAGTATTAAGTTGGGTGGATTTGGGTCCAGATAAGTTCCTGTCCGACAAAGACCTTCAGTCCGCAATGAAGCTGCTTCCAACGCTGTCTCATTCAAACATCTCTCCCGTCAGTTTCGCTACGACCAGCGAATCGTCTGCTCTGGTCATTCGCGTTTTCagcgagaagggaacgctgaGGGATCACATCTGCAAGGTGAAGCCCAAAGAGCCCTTTCTGAAGAAGTACTGCAATCCCAAAAAGATCCAGGGTCTGGAGCAGCAGCAGATCAGGACCTACGGACGACAGATCCTCGAGGCACTAAAGTTTCTCCACGACAAGGGTTTTCCGTACGGGCATCTTCACGCGTCTAACGTCCTGATCGAGGAGAACGCGTGTAAGCTGTTGGATGTAGAGAACTCTTTACTGGGACTGCCGTCATATTACCGTCCCTACGTCACACAGTTCAGGAAAATCAATACGACCGAAAGCATAGACGTCTACTCATTTGGACATTTGCTTTATGAAATGACGTACGGCCGGCCGCCTGACGCTGTGCCCGTGGATCAGTATCCTCCGGCTCCGTTCTCGTCCGTAGTCTCCGTACTTCAGTCCATCCTGTCCACGGAAGCTTGCAAAACGGGAATGCCAACCGTTTCCCAACTCCTACAAACGCCGTTATTCAATGACGTGCTGCTGTTTAACTCAGAGAAACCCCAGTTTAAGATCAGCTCCAAATTAAAGGAGGCCCTGAAATCGTCCAAGGAATGCTTGGAGAAGCGCCTAGCGGAGGAACAGAGGACGATCCACCAGCACAAGAGGCTGACGCGAGCGCAGTCGCACCACGGCTCCGAGGAAGAGAAGCGGAAAAGGAAGATCTTGGCCAGAAAGAAATCGAGACAGTCGACGTATGAAAATGAGGAGGATATTTCTGTCAAATACAATAACAACTCCGAGCATGCGCCATTTTGAACGTGTGTGGGGAGCGCCTCcagcacctcctcctcctccctcggctcctcctcctcctccctcggctcctcctcttcctccctcggctcctcctcctcccggGAACGAAGCCGTCCCTCCACCCCTCTCGTCTCCCGGGGCCAGCGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221564 lncRNA upstream 28451 5531865 ~ 5532831 (+) True G149733
TU221556 lncRNA upstream 66292 5486341 ~ 5494990 (+) True G149729
TU221542 lncRNA upstream 103938 5455573 ~ 5457344 (+) False LOC122327428
TU221540 lncRNA upstream 122847 5436837 ~ 5438435 (+) True G149720
TU221458 lncRNA upstream 356918 5203038 ~ 5204364 (+) False LOC122327380
TU221605 lncRNA downstream 34226 5609797 ~ 5610816 (+) True G149762
TU221643 lncRNA downstream 78112 5653683 ~ 5653887 (+) True G149786
TU221649 lncRNA downstream 92894 5668465 ~ 5671375 (+) True G149790
TU221671 lncRNA downstream 164001 5739572 ~ 5746316 (+) False G149806
TU221672 lncRNA downstream 164001 5739572 ~ 5746316 (+) True G149806
XM_043223007.1 mRNA upstream 369 5560276 ~ 5560913 (+) True LOC122327560
XM_043223019.1 mRNA upstream 947 5558909 ~ 5560335 (+) True rpp14
XM_043222710.1 mRNA upstream 10728 5542427 ~ 5550554 (+) True tbc1d20
XM_043222804.1 mRNA upstream 38572 5518869 ~ 5522710 (+) True LOC122327438
XM_043223878.1 mRNA upstream 47281 5503769 ~ 5514001 (+) True LOC122328172
XM_043222749.1 mRNA downstream 2614 5578185 ~ 5583041 (+) True pdhb
XM_043222960.1 mRNA downstream 8358 5583929 ~ 5588342 (+) True kctd6a
XM_043222771.1 mRNA downstream 14773 5590344 ~ 5603275 (+) True ccdc71
XM_043222992.1 mRNA downstream 78458 5654029 ~ 5655379 (+) True wu:fb55g09
XM_043222845.1 mRNA downstream 97440 5673011 ~ 5725208 (+) True LOC122327460
TU221516 other upstream 105855 5453165 ~ 5455427 (+) False LOC122327428
TU221415 other upstream 456846 5103529 ~ 5104436 (+) True G149646
XR_006247646.1 other upstream 845330 4712862 ~ 4715952 (+) True LOC122327517
TU220805 other upstream 1323213 4237454 ~ 4238069 (+) False LOC122327447
TU220637 other upstream 1707911 3852063 ~ 3853371 (+) True G149157
XR_006247632.1 other downstream 158837 5734408 ~ 5742638 (+) False LOC122327321
TU221709 other downstream 228205 5803776 ~ 5806623 (+) False tusc2b
TU221722 other downstream 271597 5847168 ~ 5848586 (+) False lsm7
TU221826 other downstream 616076 6191647 ~ 6192659 (+) True G149895
TU221839 other downstream 662716 6238287 ~ 6239357 (+) False npb

Expression Profile