Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU352043 |
| length | 1059 |
| lncRNA type | sense_over |
| GC content | 0.44 |
| exon number | 3 |
| gene id | gtf2h5 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047613.1 |
| NCBI id | CM018559.1 |
| chromosome length | 22090854 |
| location | 17233977 ~ 17236129 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU351753 | lncRNA | downstream | 151863 | 17081872 ~ 17082114 (-) | True | G297053 |
| TU351752 | lncRNA | downstream | 167549 | 17065682 ~ 17066428 (-) | True | G297052 |
| TU351750 | lncRNA | downstream | 169592 | 17064166 ~ 17064385 (-) | True | G297050 |
| TU351749 | lncRNA | downstream | 178974 | 17054364 ~ 17055003 (-) | True | G297049 |
| TU351745 | lncRNA | downstream | 183338 | 17050395 ~ 17050639 (-) | True | G297045 |
| XR_003403302.2 | lncRNA | upstream | 179855 | 17415966 ~ 17421452 (-) | True | LOC113531886 |
| TU352197 | lncRNA | upstream | 246213 | 17482324 ~ 17482887 (-) | True | G297442 |
| TU352201 | lncRNA | upstream | 269795 | 17505906 ~ 17506658 (-) | False | esr1 |
| TU352232 | lncRNA | upstream | 420114 | 17656225 ~ 17656811 (-) | True | G297465 |
| TU352485 | lncRNA | upstream | 469489 | 17705600 ~ 17760410 (-) | True | G297670 |
| XM_026922841.2 | mRNA | downstream | 1879 | 17216213 ~ 17232098 (-) | True | si:dkey-12h9.6 |
| XM_026923789.2 | mRNA | downstream | 40330 | 17168187 ~ 17193647 (-) | True | capn3b |
| XM_026923407.2 | mRNA | downstream | 81022 | 17149788 ~ 17152955 (-) | True | churc1 |
| XM_034313821.1 | mRNA | downstream | 120326 | 17092570 ~ 17113651 (-) | False | mideasa |
| XM_034313822.1 | mRNA | downstream | 120326 | 17092570 ~ 17113651 (-) | False | mideasa |
| XM_034313421.1 | mRNA | upstream | 1713 | 17237824 ~ 17248921 (-) | True | serac1 |
| XM_026922848.2 | mRNA | upstream | 20270 | 17256381 ~ 17259866 (-) | True | myct1a |
| XM_026923362.2 | mRNA | upstream | 249473 | 17485584 ~ 17506182 (-) | True | esr1 |
| XM_026922726.2 | mRNA | upstream | 276336 | 17512447 ~ 17520711 (-) | True | armt1 |
| XM_026923781.2 | mRNA | upstream | 302799 | 17538910 ~ 17600760 (-) | True | akap12b |
| TU351727 | other | downstream | 187167 | 17043313 ~ 17046810 (-) | False | ttc32 |
| TU351456 | other | downstream | 676050 | 16555103 ~ 16557927 (-) | False | G296802 |
| TU351457 | other | downstream | 676050 | 16555476 ~ 16557927 (-) | True | G296802 |
| trnal-cag_16 | other | downstream | 727064 | 16506831 ~ 16506913 (-) | True | trnal-cag_16 |
| XR_003403300.2 | other | downstream | 1091373 | 16134167 ~ 16142604 (-) | False | pln |
| TU352481 | other | upstream | 471175 | 17707286 ~ 17715244 (-) | False | acot20 |
| XR_003404857.2 | other | upstream | 839251 | 18075362 ~ 18105993 (-) | False | dpf3 |
| TU353207 | other | upstream | 1841893 | 19078004 ~ 19083465 (-) | False | ubr7 |
| LOC113547697 | other | upstream | 2029716 | 19265827 ~ 19267009 (-) | True | LOC113547697 |
| TU353415 | other | upstream | 2154888 | 19390999 ~ 19391487 (-) | False | LOC113525604 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | TCONS_00001715 | True | 2538 | lncRNA | 0.43 | 2 | NC_007112.7 | 12065156 ~ 12068877 (-) |
| eurasian perch (Perca fluviatilis) | TU309734 | True | 276 | lncRNA | 0.52 | 1 | NC_053134.1 | 16536018 ~ 16536293 (-) |
| bowfin (Amia calva) | TU19730 | True | 3340 | lncRNA | 0.42 | 2 | CM030122.1 | 31172185 ~ 31176602 (-) |
