RNA id: TCONS_00000476


Basic Information

Item Value
RNA id TCONS_00000476
length 8690
RNA type mRNA
GC content 0.43
exon number 38
gene id XLOC_000284
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 23783349 ~ 23912788 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTTGTGTTGAAATCAGTGGTGCTCTGTGCGTTGCTCTGCGGGGCTGGAGCCCAGTCGTGCCCGTCCCAGTGCTCCTGCAGCGGGACAGCGGTGGACTGCCACGGCCAGAGTCTGCGGAGCGTGCCGCGGAACATTCCCCGCAACGTTGAGCGACTGGACCTGAATGCAAACAATCTGACTAAAATCACTAAGGCAGATTTTGCGGGACTGAAGAACCTTCGAGTTCTGCAGTTAATGGAGAACAAGATCAGTTCAATTGAAAGAGGGGCATTTCAGGATCTACAAGAGCTGGAAAGACTgCGTCTCAACAGGAATAATCTTCAGGTTCTTCCGGAGTTGCTGTTTCTGGGCACGACCAAACTCTTCAGACTGGACCTGAGTGAAAATCAAATCCAGGGGATTCCCAGAAAAGCCTTCAGAGGATCTACAGAGATCAAAAACCTGCAGCTGGACTATAATCAGATTTCCTGCATTGAAGATGGAGCGTTCAGAGCTCTGCGGGACTTAGAAGTACTCACACTGAACAACAACAATATCTCTCGTTTGTCAGTGGCCAGTTTTAACCACATGCCCAAGCTCAGGACATTTCGCCTGCACTCTAATAATCTGCTATGTGATTGCAATGTGGCCTggctctctgattggctgagacaGAGGCCCCGCCTTGGCCTCTACACACAGTGTATGGCTCCACCCTCCCTTAGGGGCCACAACATCGCAGAGGTTCAGAAGAAAGAGTTTATGTGTACAGgGCCCCAGTCACACTCATCCTGTAGTGTGCTGCAGTGTCCTGAGCTCTGCACCTGCAGTAATAATGTAGTGGACTGCCGGGGGAAAGGACTTACTGAAATACCCACCAACCTGCCAGAAACTATCACTGAGATTCGACTGGAGCAAAACTCCATCAAGATTATTCCAGCAGGAGCTTTTGCACCTTACAAGCGACTCCgaagaataGATCTAAGTAATAATCAAATAACTGAATTGGCTTCAGACTCCTTTCAAGGTCTCCGTTCTTTAAACTCTCtGGTTTTATATGGGAATAAAATCACTGAACTTCCCAAAGGCCTTTTTGATGGACTGTTCTCATTGCAGCTACTATTGCTGAATGCGAACAAGATCAATTGTTTGCGTGTAGATTCTTTCCAAGACCTGCAGAATCTGAATCTTCTGTCGCTTTATGACAACAAACTTCAGACCATCGCAAAGGGAACTTTCTCTTCTCTCAGAGCTATCCAAACCCTTCATCTGGCCCAGAACCCCTTCATGTGTGACTGCCATTTGAAGTGGTTAGCAGATTACCTGCAAGACAACCCTATTGAGACCAGTGGAGCTCGGTGCACCAGTCCCCGGCGCCTTGCTAACAAACGTATTGGCCAGATCAAGAGCAAAAAGTTCCGCTGTTCagGCGTAGAAGACTACCGCTCAAAACTAGGTGGGGATTGCTTTGCTGATTTGGCCTGTCCAGAGAAATGTCGATGTGAAGGAACCACAGTGGACTGCTCTGGACAAAAGCTCACCAAGATCCCAGACCACATCCCTCAGTATACAGCAGAACTCCGCTTGAATAATAATGAATTCACAGTGCTGGAGGCTACAGGAATCTTCAAGAAGCTTCCTCAGTTGCGCAAAATcaATCTTAGCAACAATAAGATCACAGATATCGAAGAAGGCACATTTGAAGGGGCCAGTGGAGTAAATGAACTCATACTGACCAGCAATCGCTTGGAGGGGGTTCACTACAGCATGCTGAAAGGCCTCGGTGGTCTCCGCACACTGATGTTGAGGAGTAACAGGATAAGCTGTGTCAATAACGGCAGTTTTACCGGTCTGAGCTCTGTGAGGTTGCTTTCCCTCTATGATAACCTGATCACCTCCATGTCCCCAGGAGCCTTTGACACACTACATTCGCTCTCCACATTGAACTTGTTGGCCAATCCGTTTAACTGTAACTGCCATCTGGCCTGGCTTGGTGAATGGCTCCGCAAGAAACGGATTGTCACAGGCAACCCCCGCTGTCAGAGCCCCTACTTTCTCAAGGAGATCCCTATTCAAGATGTAGCTGTACAAGACTTTGCCTGTGAAGAAGgtaaCGATGAGAATAGCTGTTCACCACTGGCTCGCTGTCCTGCCGAGTGTTCGTGTTTGGATACAGTGGTTCGTTGCAGTAATAAAGGACTCAAGGTTTTGCCTAAGGGCATTCCTAGAGACGTTACAGAGCTCTATCTCGATGGCAACGAGTTCACACAAGTCCCTCTGGAACTATCCAATTATAAACACCTCACTCTCATTGATTTGAGTAATAACCAGATCAGCACATTGTCCAACCACAGCTTCAGTAACATGTCCGAGCTGCTCACACTAATTTTAAGCTACAACAGATTAAGGTGTATTCCTGCAAAAGCGTTCGACGGCCTCAAGTCTCTGCGCTTGTTGTCTCTCCATGGTAATGATATTGCTGTGATCCCAGATGGAGCTTTCAAAGATCTGTCCTCACTCTCTCACCTGGCTCTGGGCGCAAACCCCCTGTACTGTGACTGTCACATGCAGTGGCTCTCTGACTGGGTAAAGAGTGGATACAAGGAGCCTGGCATCGCCCGCTGTACCGGTCCTGGAGACATGACTGACAAACTGCTGCTCACTACACCCTCTAAGAAATTCACATGCACAGGTCCAGTGGATGTAAGCATTTTGGCTAAATGTAACCCTTGCTTGTCCAATCCCTGCAAGAATGATGGGACCTGCAGTAACCATCCTGTAGATTTTTACAGATGCACCTGCCCGTATGGTTTTAAGGGTCAAGACTGTGAGGAACCAATTCATGCATGCATCAGTAACCCCTGTCAGAATGGAGGAACCTGTCATCTGAAGGATGGAGAGGAAAACACTCACTGgtgtgtgtgtccAGAAGGATTTGAGGGTGATGAATGTGAGATAAACATTGACGACTGTGAGGATAATGACTGTGAGAATAACTCTACATGCGTGGACGGTATCAACAACTATACCTGTCTCTGCTCACCTGAATACACAGCCGCTAATAATAATGAAGTGGAGAAAGgggaGCTGTGTGAAGATAAGCTGGATTTTTGTGCTTCAGAGCTTAACCTGTGTCAGCATGACTCCAAATGTATTCTGACTGCTAAAGGCTTCATgtGTGAATGCACTCCAGGTTATACCGGTGAGCACTGTGAGGTGGATTTTGATGATTGTGAAGATAATAAGTGTAAAAACGGGGCTCAGTGTATTGATGCTGTGAACGGCTACACGTGTGTGTGTCCAGAAGGCTACAGtgggtTGTTCTGCGAGTTTTCTCCTCCGATGGTCCTGCCAAGAACAAGTCCATGCGATCACTACGACTGTGCCAACGGTGCAcagtgtgttgtgaaggacacgGACCCCGTGTGTCAGTGTCTGCCAGGTTATGAGGGTGTGCACTGTGAAAGACTGGTCAGCGTCAACTTCATCAACAGAGAATCCTTCCTGCAAATCCCCTCCAACCTCATTACAGAACAGGCCAATATATCTCTGCAGATCGCCACAGATGAGGATAATGGAGTGTTGCTGTACAAAGGAGATAATGAACACATTGCTGTGGAGCTTTACAGAGGCCGACTGAGAGTCAGTTATGACTCTGGATCATATCCTCCATCTGCAATCtacagTGTCGAGACAATAAATGATGGCAGCTTTCATGTAGTGGAGCTGGTGGCAAAGGATCAGTCTCTGTCACTGTCCATTGATGGAGGAAGCCCGAAATCCATCAACACTGCCAATAGCCCCAGCCCAGTGCCCAGCCCGGCCCCGCTTTATCTTGGTGGTCTTCCTCAGCAGTCTGGATTGGCCTCGTTGCGTCAGGGCTCTGGCAGGAATGGCTCTAGTTTccatggctgcatccgaaatctcTACATTAATGACCAACTCCAGGATCTCACCCAGTTTTTGCTGCAGGAGGGTGTTGTGCCCGGATGCCAGCCATGCCAGCGGAGCATGTGTGCTCATGGCCAGTGCCATGCCACTGGACAGTCCTCTTTCAGCTGTGAGTGTGAGGCGGGATGGACTGGCCCGCTCTGTGACCAGCAGGTCAACAACCCATGTGACGGGAACAAGTGTATCCATGGCTCGTGTATGGCCATAAACTCATACTCGTACAGCTGCCGTTGTCTTCCAGGCTTTGCAGGTGTGCTGTGTGATGAAGAGGAGCAGCTCAGCCCCTGTCAGTATATAGCATGCAAATACGGCCGATGTCGTGTGTCTGGACTGGGCAAAGCCTATTGTGAGTGCAACAGCGGCTACACGGGGCAAAGCTGCGACAGAGCTGCTACTGAAAGCGGTATGGACCCCACTCAGGTCCGCCAGAGATGGCGTGTCGGGGGGAACGGGTCCGAGATCACTATCAGACGCAGCAGGGCTACGCCGCGTGCCAGAGCACAGAGAAGGTCTCGCGTTTAGAGTGTCGGGGCAGCTGTGGGGACGGGACCTCCTGCTGCGCCCCGCTCCGCAGCAAACGCAGGAAATACACCTTCCAATGCACAGACGGGTCCTCTTTTGTACAGGAGGTGGAAAAGGTTGTCAAGTGTGGCTGCACAAAATGTCCatcctaaaacaacaacaacaaaaatacatcCTCACCCTCCCCTTGTTTGAAGTcccctgttttgtttttgtcagtgTTGGACTAATGTTTTTTTCCTTCAAAGGAGATAATGGATTACTGTAAGATAAAGAACCTATTTTTTATTATGAAGCTgagaaaaaaggacaaaaaatagATTTTAGAGGTTTTTTATTTGCCATCTTAGGTACTGTGACGTTttcattacctttttttttttttttgggcaaaATCACCTCAAATAAGAATGGAAAGCAAACACACCCTGACGACatgtttcttttttgtgtgtgtcattcTATGTGCCattctttttttgtgattttctgGACTGCCGTAACTCATTTCACCTGGACTTTGTGAAGGTGAGATAAAGTATCATTATGGAGGCTGCAAGGGGATTCACTGAGAGCGGAGGATTCCCATCTTACTTCCttacaccacacaaacacactatcATAGCTGctttctcttacacacacacaccatcccTACTAAGTATACACCCATGGTCTCTtccagcatgcacacacacatacacacacacacacacacacacacactcttttctGATCCGCATTATAAACCATGTGtatttattgtatcaaaaatactGTCACATTACTTATACTCAGTATAGCCCTTGGTTCCCTGGAGTTACAGTTGGAATttcttaatatatattaatttatattcgTCCTCTTACCGATTTAAATCACTCATAGCTTATTGAGTAGAAAACTAACGTTGTGTCTCCTTCGGTTGGTTGGTTTGACCAATGGGACTGTTGTATTTACAgtgaaaaaagcaaaaaaatacataaaaaagaaaattctaaaaaaaaaaaaaaagttaataaataaataacttagtGGTGTTCTGAATCTTCAAATGTGAAGTGAAAACATTGTATATTTTTGTCAAATCTCCTAAAATTTGTATGGTGACACAGACGTGCTTTATATTAGAGTTTAAATGTATAGTTAAAATCTCCCCTTGTATTCTGTATAGAGCACATGCcctagttaaaaaaataataataataatgaaaataacagTAGCGTCCATAGCTGTCAATAAAGCTCTTTTTAAAATATCCTCCTTGCAAATCCTTTTTAACGAAACAAATAGAAAGAAAAACTGtgactttttttctaaatgatACTACTTTGTTACCACTCTGTCTCCCCCATGTTAACATGTTGCTGCTAAATTGGTATTGTAGACTTTGGATGATGATGCTGATGTTTATTGTAGAGGACGTTGCTCATTCATTGAGCAAATTGTTTTACTGATCAATGAATAAAGATGTCCCCTCCCTTTACTGTGTTTGCTTTGTTCATTTAAATAGGTAAATGTCTTGAGCTAACTGCAGTAAAGAGTGCCACAAGGCTCTGTCttatgctgcagtcacactagagcatgtgaaattctgttgtacagcgctgcgaaaaggggcgacGATTaggatgattagacattaaaaaaaagcaagcTAGTGGTCTATATTtaacatttctgtacagagaggtcatgttttgagcttcgattggtctcacacagtcacgtgatgcaattttgcaggtcagagtttgcCAAGCTAGAACTTTACAGTGCAGCAacatgcaaaacttgtcgcacaagcctGCGTTTCCTGTCTTCTGCTTTCGCATGCGTATGCATGGAAATCTATGGGgctaaaagtgcagtgtgaccatgaCTTTAGGCCCACAGCTATTTTTAGTTTATATGCTACGCCACGTTATCATTATTAGAAAACATCAGGTTAATTATATTTGTCATACAGATGCTATTTattacagggtgtccgcggggtcttgaaaagtattaaaagttgttaaatcagttatgagaaaattaaggcccttaaaaggtattaaacaaattattgagtttttacaaagtcttaaattttgttcaagcgatGTCCAAAGCGTTTGACCAAAAAAGCATACATACGTTTATGTTTCTCCTAATATATTAACAATGGCATGCTCAATTCATGCGTTTGGTTTGGGCTGGGGTGCATCTGGCCAAGCTCCTCTTCTGCAGCAGGACATATAGTATataaagagtttatttgcaaaaacagagaacaccttttttttttttttttttaaagacacgtGCATTAAAGAGAACACTTGCAAAAACTAGCATGATGTATGGAAATGACTAAAGCTGTGGattttagtagttttcagaaattatgtttttatattaagtattaaagatttgtttaaagataattatgtgaacaaaaaaaaaaaaaaacctcttcgTTAAAATATAAGACGTTAAGAGATGGTGTCCATTTCACTGGCCACACAATGGATGGAAACAACAAAGAGATATAGTAGTATGttccaactcattatctgcattagatggtttttacagtgattaaagagaTCATCTTTAAGACAGGACTTTCTAtatgaaatttgtacaaaatttaTACTGAATTGAAAGAGAAACAATGTTTATGAATGCCTACTCATGTACAGGAGTAGAGGTGAATGAGTTggcagagaagctgacttaaaacttgctcagagaaaGGCTGTTGTTATTTCACAaatcagtttaatggtgaagggattgatcgAACAGGTCTATTGATCGAAGGTTTGTGAAGAAATGTCACACttccttgtaaaagtattttgtataattttctaaatacagtagtttattttaatacatttgtggctgctgtttTCTTTAGTTTATTTCACATACATGTAAAAttgaggtatttggtattttattttaaaatacatttcagtgcACAGTATTATTGCCCATCCCTGGCGATTCTTCATCATGAGCTCAGCTGCAGAGTGACAGATGTCCAGATAGACCTCAACACTGCATTTCATGAAATATCAACTAAACAGCTCTCGTGAAAAGACATTTTAACATGTTCATATATATAAAGCATTATGACGTATATGTCTATTTTGGTTGTTTAAATTTACCTACAGTGTGATCAAGTTGTTATACACTGTAATAGTGGCTGTTTTagcatatgagcaattccataaATGTgaacctcattcattcattcattcatccattcattcattttcttttcagcttagtccctttattgatctggggtcgccacagcagaatgaaccgccaacttatacagcatatttttttatgcagcgcatgcccttccagctgaaacccatcactggtaaaacATTCgtacacacgctcacacacacacacacctacattatgGTCAATTTTGGcataatcaattcacctatatcacatgtctttggactgtgggggacaccagagcacctggaggaaacccacgcaaaaacggggagaacatgcaaactccacacagaaatgccaactgacccagccgaggctcgaaccagcgactttcttgctgtgaggcaaaagtgctacccAATTCGCCACCACGTCGCCAAATGTGAACCTCGCCATGAAAAAAGGTTTTCACCAAAAACCCTTTCTAAGTTTGTTTGAgcaggcttgtattttacagtacggaaatactcaaaaatgtatctgtcaaggttttttcaaaaattatatttgttttacaaaagtCACACAAATGGAAATTTCatatctgtcacatccataacagagcgTTTTCCTcataactgcaaaaaatgttaaataaaatatattaaaatcaatcattttagttCTATAGTGAATCTggtaattcacagaatttctagaAGCTATGTtgaatactgtaaacttgcaaacCTTTTTGGGTTTTGATTTGAAATATGAAAAATtgtgattgattttttttaattgtaattgtgattaattgattgtttttttctgatctcctaactctgtggttagtaatttaataaaaataaaaaaagatgtttcaatataatgttaacatatactttctctgtgaatttatgttttgagattttactgcaaatgtcacatccattatgctggaattgctcatatttcTGTGCAAAGCAGATTTCGCCTTCTATTTCGTGACTTCAGGTCAAATGCTCTGTTTTAG

Function

GO:

id name namespace
GO:0001763 morphogenesis of a branching structure biological_process
GO:0050919 negative chemotaxis biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0030517 negative regulation of axon extension biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0003262 endocardial progenitor cell migration to the midline involved in heart field formation biological_process
GO:0033564 anterior/posterior axon guidance biological_process
GO:0030308 negative regulation of cell growth biological_process
GO:0007411 axon guidance biological_process
GO:0007414 axonal defasciculation biological_process
GO:0005576 extracellular region cellular_component
GO:0048495 Roundabout binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0008201 heparin binding molecular_function

KEGG:

id description
ko04360 Axon guidance
ko04361 Axon regeneration
ko00536 Glycosaminoglycan binding proteins

ZFIN:

id description
ZDB-GENE-010306-3 Predicted to enable Roundabout binding activity and heparin binding activity. Acts upstream of or within endocardial progenitor cell migration to the midline involved in heart field formation; generation of neurons; and morphogenesis of a branching structure. Predicted to be located in extracellular region. Is expressed in several structures, including axial mesoderm; forebrain neural tube; hypochord; nervous system; and neural plate. Orthologous to human SLIT2 (slit guidance ligand 2).

Ensembl:

ensembl_id ENSDART00000187183

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000466 lncRNA upstream 278387 23489111 ~ 23506518 (+) False XLOC_000281
TCONS_00000468 lncRNA upstream 278387 23505666 ~ 23506518 (+) True XLOC_000281
TCONS_00000462 lncRNA upstream 404695 23379008 ~ 23380210 (+) True XLOC_000278
TCONS_00003067 lncRNA upstream 1266151 22510734 ~ 22518754 (+) False XLOC_000269
TCONS_00002830 lncRNA downstream 205579 24118367 ~ 24119067 (+) True XLOC_000288
TCONS_00003069 lncRNA downstream 213592 24126380 ~ 24144170 (+) True XLOC_000289
TCONS_00003070 lncRNA downstream 424192 24336980 ~ 24337792 (+) False XLOC_000290
TCONS_00000481 lncRNA downstream 424274 24337062 ~ 24343734 (+) False XLOC_000290
TCONS_00000482 lncRNA downstream 425604 24338392 ~ 24343190 (+) True XLOC_000290
TCONS_00000469 mRNA upstream 211675 23559478 ~ 23573230 (+) False XLOC_000282
TCONS_00000470 mRNA upstream 212080 23560216 ~ 23572825 (+) False XLOC_000282
TCONS_00000471 mRNA upstream 212331 23563691 ~ 23572574 (+) True XLOC_000282
TCONS_00000464 mRNA upstream 366968 23406403 ~ 23417937 (+) False XLOC_000280
TCONS_00000465 mRNA upstream 366994 23408622 ~ 23417911 (+) True XLOC_000280
TCONS_00000479 mRNA downstream 163455 24076243 ~ 24078099 (+) True XLOC_000286
TCONS_00000483 mRNA downstream 442727 24355515 ~ 24359653 (+) False XLOC_000291
TCONS_00000486 mRNA downstream 452794 24365582 ~ 24367412 (+) False XLOC_000293
TCONS_00000487 mRNA downstream 453322 24366110 ~ 24367056 (+) True XLOC_000293
TCONS_00000488 mRNA downstream 463606 24376394 ~ 24380533 (+) True XLOC_000294
TCONS_00000472 other upstream 33692 23751099 ~ 23751213 (+) True XLOC_000283
TCONS_00000467 other upstream 279802 23504334 ~ 23505103 (+) False XLOC_000281
TCONS_00000457 other upstream 505203 23274922 ~ 23279702 (+) True XLOC_000276
TCONS_00000444 other upstream 1263579 22521212 ~ 22521326 (+) True XLOC_000270
TCONS_00000435 other upstream 2218304 21564506 ~ 21566601 (+) True XLOC_000264
TCONS_00000480 other downstream 201737 24114525 ~ 24114558 (+) True XLOC_000287
TCONS_00000490 other downstream 470179 24382967 ~ 24384697 (+) True XLOC_000295
TCONS_00000495 other downstream 1207301 25120089 ~ 25120205 (+) True XLOC_000301
TCONS_00000518 other downstream 2198597 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000557 other downstream 3800561 27713349 ~ 27730980 (+) False XLOC_000329

Expression Profile

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